Browse Element(s) Details


OsAffx.17782.1.S1_at

Description tigr:9637.m01642
TID=OsAffx.17782.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1948011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g19440OsAffx.17780.1.S1_at10/119+11637039..11638060hypothetical protein
LOC_Os09g19450OsAffx.32056.1.S1_x_at7/119+11643015..11647246transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g19450OsAffx.10637.3.S1_s_at6/119+11643015..11647246transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g19450OsAffx.10637.4.S1_s_at5/119+11643015..11647246transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g19450OsAffx.10637.1.S1_s_at3/119+11643015..11647246transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g19450OsAffx.32056.1.S1_at2/119+11643015..11647246transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g19460NANA9+11647556..11647918hypothetical protein
LOC_Os09g19470OsAffx.17781.1.S1_at11/119+11654238..11654534hypothetical protein
LOC_Os09g19470OsAffx.17781.1.S1_x_at11/119+11654238..11654534hypothetical protein
LOC_Os09g19480OsAffx.17782.1.S1_at11/119+11660025..11660862hypothetical protein
LOC_Os09g19490OsAffx.29924.1.S1_at11/119+11661543..11661995hypothetical protein
LOC_Os09g19500OsAffx.17783.1.S1_s_at11/119+11663441..11666859leucine-rich repeat protein kinase, putative
LOC_Os09g19500OsAffx.17783.1.S1_at9/119+11663441..11666859leucine-rich repeat protein kinase, putative
LOC_Os09g19510Os.53875.1.S1_at7/119+11670312..11675422Senescence-induced receptor-like serine/threonine-protein kinaseprecursor, putative, expressed
LOC_Os09g19520Os.24942.4.A1_x_at6/119+11679927..11680334hypothetical protein
LOC_Os09g19520Os.24942.4.A1_at2/119+11679927..11680334hypothetical protein
LOC_Os09g19530NANA9+11682894..11689049transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17782.1.S1_at--168--91Chr09:11660062..11660086 (25 bp)
ATTCCACTTTCCACCTTGAGGGAGA
LOC_Os09g19480
OsAffx.17782.1.S1_at--972--10751Chr09:11660089..11660113 (25 bp)
TTGAGCTCGTCAATCAGGCATTCCC
LOC_Os09g19480
OsAffx.17782.1.S1_at--381--6231Chr09:11660124..11660148 (25 bp)
GATGGCGAACCACGCATTCTAGAAT
LOC_Os09g19480
OsAffx.17782.1.S1_at--470--111Chr09:11660139..11660163 (25 bp)
ATTCTAGAATCCCAGGCGATCTTGC
LOC_Os09g19480
OsAffx.17782.1.S1_at--162--511Chr09:11660257..11660281 (25 bp)
ATCGTGTGCTCACCTTTGCTGAGGA
LOC_Os09g19480
OsAffx.17782.1.S1_at--91--4891Chr09:11660509..11660533 (25 bp)
GCTTTCCGTATCCATGGTGCACAAA
LOC_Os09g19480
OsAffx.17782.1.S1_at--241--6431Chr09:11660543..11660567 (25 bp)
GATACGGGACGGTTCTAATACTCAC
LOC_Os09g19480
OsAffx.17782.1.S1_at--824--5351Chr09:11660589..11660613 (25 bp)
GAAGATGGCGGCCTATCAGGACTCC
LOC_Os09g19480
OsAffx.17782.1.S1_at--334--2091Chr09:11660630..11660654 (25 bp)
ACATATCTCCACCTCTGATCAAGAG
LOC_Os09g19480
OsAffx.17782.1.S1_at--954--1211Chr09:11660735..11660759 (25 bp)
AGTTGCCCGCTGAGAACCGAAGGCT
LOC_Os09g19480
OsAffx.17782.1.S1_at--512--1071Chr09:11660777..11660801 (25 bp)
AGGGACATGTCGAGCTTGCCGAGCT
LOC_Os09g19480
Target Sequence 
ATTCCACTTTCCACCTTGAGGGAGAGATTGAGCTCGTCAATCAGGCATTCCCGATGCTTGAAGATGGCGAACCACGCATT
CTAGAATCCCAGGCGATCTTGCCTCCTGTCAGGCCCGGCGAGGGGTCAAGCGGCCACCACGATGGATCGGCCGAACTGAT
CGAACCCCGTTTTGGCCATTCTGGTTCCCCGTTCGATCGTGTGCTCACCTTTGCTGAGGAGGATAAAAGGGAGCCTGTGG
CTTTCCGTATCCATGGTGCACAAACACCCACAAGATACGGGACGGTTCTAATACTCACCATCATTCCCACTAAAAAGATG
AAGATGGCGGCCTATCAGGACTCCCCACCTATCAGACGCCACATATCTCCACCTCTGATCAAGAGGTTGACAGGAGAGTT
CGAGAGTGATGGAGATAAATATCCACATGAGCCTACGGTGGCTTGCTTAGCCTCCTCTATTGCTCAGTTGCCCGCTGAGA
ACCGAAGGCTTAAAGACAACGTGGTAGAGGGACATGTCGAGCTTGCCGAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17782.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis