Browse Element(s) Details


OsAffx.1780.1.S1_x_at

Description gb:NM_183840.1
DB_XREF= gi:34894807
GEN=P0554D10.7
TID=OsAffx.1780.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0554D10.7 (P0554D10.7), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g129702/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g12940OsAffx.25079.1.S1_at11/113+6959904..6968702Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os03g12940Os.52614.1.S1_at11/113+6959904..6968702Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os03g12940Os.8509.1.S1_at1/113+6959904..6968702Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os03g12950Os.54629.1.S1_at11/113+6971992..6976294ANT, putative, expressed
LOC_Os03g12960OsAffx.3217.1.S1_at11/113+6983091..6983344hypothetical protein
LOC_Os03g12970OsAffx.25080.1.S1_at11/113+6986053..6986286hypothetical protein
LOC_Os03g12970OsAffx.1780.1.S1_x_at2/113+6986053..6986286hypothetical protein
LOC_Os03g12980OsAffx.12837.1.S1_at10/113+6988854..6989636hypothetical protein
LOC_Os03g12990Os.39075.1.S1_at11/113+6997456..6998414Phytosulfokine precursor protein containing protein, expressed
LOC_Os03g13000Os.28855.1.S1_at11/113+7001957..7005285GTP-binding protein, putative, expressed
LOC_Os03g13000Os.55138.1.S1_x_at1/113+7001957..7005285GTP-binding protein, putative, expressed
LOC_Os03g13010Os.8251.1.S1_at11/113+7008263..7010744U-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.1780.1.S1_x_at--750--4572Chr02:22399518..22399540 (23 bp)
GCGCGGCGAGCTAGCGATTGTTTCC
NONE
OsAffx.1780.1.S1_x_at--258--4632Chr03:6986174..6986198 (25 bp)
GCGATTGTTTCCTCCTCGGATGGGA
LOC_Os03g12970
OsAffx.1780.1.S1_x_at--93--813Chr03:6986193..6986217 (25 bp)
ATGGGAGCCGCCGTTTGGCTGCCTC
LOC_Os03g12970
OsAffx.1780.1.S1_x_at--875--7571Chr01:12648508..12648571 (25 bp)
GGGCTGTGCACTTACATGCCTTCGC
NONE
OsAffx.1780.1.S1_x_at--411--8691NONE
TGTGCACTTACATGCCTTCGCCATG
NONE
OsAffx.1780.1.S1_x_at--53--3672Chr02:22399626..22399697 (25 bp)
CTTACATGCCTTCGCCATGGCGTCT
NONE
OsAffx.1780.1.S1_x_at--518--871Chr01:12648573..12648597 (25 bp)
ATGGCGTCTTGCTACCGCAGAAGCT
NONE
OsAffx.1780.1.S1_x_at--195--10731Chr01:12648581..12648605 (25 bp)
TTGCTACCGCAGAAGCTCAGCGCAG
NONE
OsAffx.1780.1.S1_x_at--1154--4111Chr01:12648588..12648612 (25 bp)
CGCAGAAGCTCAGCGCAGGTCCGGA
NONE
OsAffx.1780.1.S1_x_at--556--4831Chr01:12648595..12648619 (25 bp)
GCTCAGCGCAGGTCCGGAGGAAGAA
NONE
OsAffx.1780.1.S1_x_at--398--5352Chr03:6986382..6986403 (22 bp)
GAAGAAGGACGAGACACGGGTTCAA
NONE
Target Sequence 
GCGCGGCGAGCTAGCGATTGTTTCCTCCTCGGATGGGAGCCGCCGTTTGGCTGCCTCGGCGTCGTCGCCGGCATCGGCGC
CGCCGGCACCAACGTCTATGGGGCTGTGCACTTACATGCCTTCGCCATGGCGTCTTGCTACCGCAGAAGCTCAGCGCAGG
TCCGGAGGAAGAAGAAGGACGAGACACGGGTTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.1780.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis