Browse Element(s) Details


OsAffx.17822.1.S1_at

Description tigr:9637.m01830
TID=OsAffx.17822.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2127011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g21220OsAffx.4929.1.S1_at1/119+12808266..12809010hypothetical protein
LOC_Os09g21230Os.52593.1.S1_s_at11/119+12816241..12820673acyl-activating enzyme 17, putative, expressed
LOC_Os09g21230Os.38408.1.S1_a_at11/119+12816241..12820673acyl-activating enzyme 17, putative, expressed
LOC_Os09g21240NANA9+12822760..12823020hypothetical protein
LOC_Os09g21250Os.50756.1.S1_at10/119+12824718..12827073expressed protein
LOC_Os09g21260OsAffx.29959.1.S1_at11/119+12830414..12831877Cytochrome P450 family protein, expressed
LOC_Os09g21270OsAffx.17822.1.S1_at11/119+12832198..12833402hypothetical protein
LOC_Os09g21280NANA9+12834965..12837614hypothetical protein
LOC_Os09g21290Os.51764.1.S1_at11/119+12846731..12847958expressed protein
LOC_Os09g21300OsAffx.29960.1.S1_at11/119+12850202..12851458hypothetical protein
LOC_Os09g21310OsAffx.31069.1.S1_x_at2/119+12852497..12855501retrotransposon protein, putative, unclassified
LOC_Os09g21320OsAffx.20387.1.S1_x_at2/119+12856015..12863188retrotransposon protein, putative, unclassified
LOC_Os09g21320OsAffx.10632.1.S1_at1/119+12856015..12863188retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17822.1.S1_at--681--7791Chr09:12832297..12832321 (25 bp)
GGTCCCGCTGCCTTCAGAAGGACTG
LOC_Os09g21270
OsAffx.17822.1.S1_at--44--7211Chr09:12832396..12832420 (25 bp)
GTCGTCGACGAGTCTGGCCCGACAG
LOC_Os09g21270
OsAffx.17822.1.S1_at--881--6092Chr09:12832405..12832429 (25 bp)
GAGTCTGGCCCGACAGCGGCGAGGA
LOC_Os09g21270
OsAffx.17822.1.S1_at--329--991Chr09:12833278..12833298 (21 bp)
AGGAGTCTGCGCGTGTTCAGTAAAT
LOC_Os09g21270
OsAffx.17822.1.S1_at--593--1151Chr09:12833278..12833301 (24 bp)
AGTCTGCGCGTGTTCAGTAAATTCA
LOC_Os09g21270
OsAffx.17822.1.S1_at--968--9831Chr09:12833294..12833318 (25 bp)
TAAATTCAGTTTAGGCGACGATTCT
LOC_Os09g21270
OsAffx.17822.1.S1_at--727--10411Chr09:12833304..12833328 (25 bp)
TTAGGCGACGATTCTACGGTGGATC
LOC_Os09g21270
OsAffx.17822.1.S1_at--450--4611Chr09:12833308..12833332 (25 bp)
GCGACGATTCTACGGTGGATCTGAT
LOC_Os09g21270
OsAffx.17822.1.S1_at--445--6571Chr09:12833330..12833354 (25 bp)
GATTCTTGGCGCCAGAGATGCAGAT
LOC_Os09g21270
OsAffx.17822.1.S1_at--641--9591Chr09:12833333..12833357 (25 bp)
TCTTGGCGCCAGAGATGCAGATCAG
LOC_Os09g21270
OsAffx.17822.1.S1_at--918--4411Chr09:12833340..12833364 (25 bp)
GCCAGAGATGCAGATCAGGCCGAGT
LOC_Os09g21270
Target Sequence 
GGTCCCGCTGCCTTCAGAAGGACTGCTCCCGCCCCGCCGCCTCCGGGAGGCCCACCCCCACCCCCGCCGCCCGAGGGCGC
GTCGCTCCGCCGCTACGACGTCGTCGACGAGTCTGGCCCGACAGCGGCGAGGAGTCTGCGCGTGTTCAGTAAATTCAGTT
TAGGCGACGATTCTACGGTGGATCTGATTCTTGGCGCCAGAGATGCAGATCAGGCCGAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17822.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis