Browse Element(s) Details


OsAffx.17862.1.S1_at

Description tigr:9637.m02029
TID=OsAffx.17862.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2368011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g23650Os.15565.1.A1_at11/119+14049929..14052565Hsc70-interacting protein, putative, expressed
LOC_Os09g23650OsAffx.31610.1.S1_x_at11/119+14049929..14052565Hsc70-interacting protein, putative, expressed
LOC_Os09g23660Os.50959.1.S1_at11/119+14055109..14059315ZIM motif family protein, expressed
LOC_Os09g23660Os.14666.2.S1_x_at11/119+14055109..14059315ZIM motif family protein, expressed
LOC_Os09g23670Os.35344.18.S1_x_at10/119+14067610..14070736hypothetical protein
LOC_Os09g23670Os.35344.3.S1_x_at9/119+14067610..14070736hypothetical protein
LOC_Os09g23670OsAffx.22940.5.S1_x_at3/119+14067610..14070736hypothetical protein
LOC_Os09g23680OsAffx.17862.1.S1_at11/119+14077033..14077377hypothetical protein
LOC_Os09g23690Os.17618.2.S1_x_at1/119+14083215..14086555UBX domain containing protein, expressed
LOC_Os09g23690Os.17618.1.S1_at1/119+14083215..14086555UBX domain containing protein, expressed
LOC_Os09g23700NANA9+14087505..14088130hypothetical protein
LOC_Os09g23710OsAffx.17863.1.S1_at11/119+14091584..14092186hypothetical protein
LOC_Os09g23720Os.22695.1.S1_s_at11/119+14094778..14098856expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17862.1.S1_at--818--4771Chr09:14077075..14077099 (25 bp)
GCTGCGGCCAACGATGCTATGGTAG
LOC_Os09g23680
OsAffx.17862.1.S1_at--418--3431Chr09:14077156..14077180 (25 bp)
CAGAGACGTCTTCCCTGCGATGGAG
LOC_Os09g23680
OsAffx.17862.1.S1_at--144--9151Chr09:14077171..14077195 (25 bp)
TGCGATGGAGCCCTACACACTACGG
LOC_Os09g23680
OsAffx.17862.1.S1_at--977--9851Chr09:14077184..14077208 (25 bp)
TACACACTACGGCTGATGACGCTAT
LOC_Os09g23680
OsAffx.17862.1.S1_at--113--3731Chr09:14077190..14077214 (25 bp)
CTACGGCTGATGACGCTATGGTGGA
LOC_Os09g23680
OsAffx.17862.1.S1_at--383--1871Chr09:14077216..14077240 (25 bp)
ACGAGGTCGAGGACAGAGACTTGCA
LOC_Os09g23680
OsAffx.17862.1.S1_at--65--6191Chr09:14077224..14077248 (25 bp)
GAGGACAGAGACTTGCATCGCCTCA
LOC_Os09g23680
OsAffx.17862.1.S1_at--477--3911Chr09:14077291..14077315 (25 bp)
CTGGAGCTCGCTCCCTATGTGCTAT
LOC_Os09g23680
OsAffx.17862.1.S1_at--654--10111Chr09:14077306..14077330 (25 bp)
TATGTGCTATCGTCCATGAGCCCAA
LOC_Os09g23680
OsAffx.17862.1.S1_at--198--10151Chr09:14077313..14077337 (25 bp)
TATCGTCCATGAGCCCAAGTGATGC
LOC_Os09g23680
OsAffx.17862.1.S1_at--1054--8911Chr09:14077322..14077346 (25 bp)
TGAGCCCAAGTGATGCCAGAGAATT
LOC_Os09g23680
Target Sequence 
GCTGCGGCCAACGATGCTATGGTAGAGACGAGGTTGGGGATGGAGACCCACACGCCACCTCGTTTTCTCCACCACGACCT
CCAGAGACGTCTTCCCTGCGATGGAGCCCTACACACTACGGCTGATGACGCTATGGTGGAGACGAGGTCGAGGACAGAGA
CTTGCATCGCCTCATCTTCTCCCCCACCTTCGCAGCCGACGACGCCACGCCGAGTGCTGGAGCTCGCTCCCTATGTGCTA
TCGTCCATGAGCCCAAGTGATGCCAGAGAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17862.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis