Browse Element(s) Details


OsAffx.17887.1.S1_at

Description tigr:9637.m02155
TID=OsAffx.17887.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Helix-loop-helix DNA-binding domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2504011/11Helix-loop-helix DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g25000OsAffx.17885.1.S1_at11/119+14937244..14938885Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os09g25000OsAffx.17885.1.S1_x_at11/119+14937244..14938885Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os09g25010OsAffx.30011.1.S1_at11/119+14944844..14947895hypothetical protein
LOC_Os09g25030NANA9+14956166..14956735hypothetical protein
LOC_Os09g25040OsAffx.17887.1.S1_at11/119+14958367..14961768Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os09g25040OsAffx.17887.1.S1_x_at11/119+14958367..14961768Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os09g25040OsAffx.27510.2.S1_x_at1/119+14958367..14961768Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os09g25050Os.36403.1.S1_at11/119+14970347..14974374pentatricopeptide, putative, expressed
LOC_Os09g25060Os.25606.1.S1_at9/119+14975022..14976712WRKY DNA binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17887.1.S1_at--786--1211Chr09:14959678..14959702 (25 bp)
AGTTCCTACAACTCCAAGTCAAGGC
LOC_Os09g25040
OsAffx.17887.1.S1_at--270--2551Chr09:14959669..14959693 (25 bp)
AACTCCAAGTCAAGGCAAGCACGTA
LOC_Os09g25040
OsAffx.17887.1.S1_at--525--7051Chr09:14959661..14959685 (25 bp)
GTCAAGGCAAGCACGTACACTAAAT
LOC_Os09g25040
OsAffx.17887.1.S1_at--500--8191Chr09:14959656..14959680 (25 bp)
GGCAAGCACGTACACTAAATTACTA
LOC_Os09g25040
OsAffx.17887.1.S1_at--787--331Chr09:14959565..14959655 (25 bp)
ATACATGTTTTGAGCATGAGCCGGT
LOC_Os09g25040
OsAffx.17887.1.S1_at--912--671Chr09:14959550..14959574 (25 bp)
ATGAGCCGGTTAGGTGGCGCCGCAG
LOC_Os09g25040
OsAffx.17887.1.S1_at--435--1631Chr09:14959083..14959107 (25 bp)
AGCGATAGCCTGACGGTGACGGAGC
LOC_Os09g25040
OsAffx.17887.1.S1_at--1054--8191Chr09:14959001..14959025 (25 bp)
GGAAGGGCCTCTGCCTCATGCCGAT
LOC_Os09g25040
OsAffx.17887.1.S1_at--697--9331Chr09:14958783..14958807 (25 bp)
TCGCCGAGCATGTCGGTGCTCACGG
LOC_Os09g25040
OsAffx.17887.1.S1_at--1042--4991Chr09:14958776..14958800 (25 bp)
GCATGTCGGTGCTCACGGCGCAGTC
LOC_Os09g25040
OsAffx.17887.1.S1_at--406--8391Chr09:14958760..14958784 (25 bp)
GGCGCAGTCGGCCATGGCCAACGGC
LOC_Os09g25040
Target Sequence 
AGTTCCTACAACTCCAAGTCAAGGCAAGCACGTACACTAAATTACTAATACATGTTTTGAGCATGAGCCGGTTAGGTGGC
GCCGCAGCCGTCGCGCCGCTCGTGGCCGACATGTCCTCGGAGGGGCGAGGCGGCGGCGCGGCGAACGGCGGAGCACCGGC
GGCGGCGGGGAGCGATAGCCTGACGGTGACGGAGCAGCAGGTGGCCAAGCTGATGGAGGAGGACATGGGCACCGCCATGC
AGTACCTGCAGGGGAAGGGCCTCTGCCTCATGCCGATCTCCCTCGCGTCCGCCATCTCCTCGGCGACGTGCCATCTCCGG
CCGCCGGTGGTCGCCGCCGCGCAGCAGTTCCCGGCCGGGCTCGGCGCCGCCGCTGCCGCCGCGCACCACCACCAACTGAG
CGCGGCGGCGGCGGCGGCGGCCATGCGCGGACACCTGCCCGGCCTGAACGCCGACGGCTCCGTGCCGGCCTCGCCGAGCA
TGTCGGTGCTCACGGCGCAGTCGGCCATGGCCAACGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17887.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis