Browse Element(s) Details


OsAffx.17895.1.S1_s_at

Description tigr:9637.m02228
TID=OsAffx.17895.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2572011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g25640Os.49473.1.S1_at11/119+15399723..154054135' nucleotidase family protein, putative, expressed
LOC_Os09g25650OsAffx.17894.1.S1_at11/119+15407553..15414547GEX2, putative, expressed
LOC_Os09g25660NANA9+15415087..15416486transposon protein, putative, Pong sub-class
LOC_Os09g25670NANA9+15417299..15418558transposon protein, putative, Pong sub-class
LOC_Os09g25679NANA9+15418768..15419206NA
LOC_Os09g25690OsAffx.6397.1.S1_at11/119+15419769..15420566hypothetical protein
LOC_Os09g25700OsAffx.6398.1.S1_at11/119+15421387..15423389hypothetical protein
LOC_Os09g25710OsAffx.6399.1.S1_at11/119+15425337..15425864expressed protein
LOC_Os09g25720OsAffx.17895.1.S1_s_at11/119+15429675..15430148expressed protein
LOC_Os09g25720OsAffx.17895.1.S1_at11/119+15429675..15430148expressed protein
LOC_Os09g25730NANA9+15430738..15432537transposon protein, putative, unclassified
LOC_Os09g25740OsAffx.30020.1.A1_at11/119+15437140..15439298expressed protein
LOC_Os09g25740Os.52395.1.S1_x_at11/119+15437140..15439298expressed protein
LOC_Os09g25740Os.52395.1.S1_at11/119+15437140..15439298expressed protein
LOC_Os09g25760Os.6961.1.S1_a_at11/119+15443235..15445530senescence-associated protein DH, putative, expressed
LOC_Os09g25770Os.49485.1.S1_at10/119+15446684..15448981Integral membrane protein DUF6 containing protein, expressed
LOC_Os09g25784Os.54575.1.S1_at11/119+15449530..15455011Integral membrane protein DUF6 containing protein, expressed
LOC_Os09g25784Os.52700.1.S1_at11/119+15449530..15455011Integral membrane protein DUF6 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17895.1.S1_s_at--112--3991Chr09:15429890..15429914 (25 bp)
CGTGTCCGTTTCTGGGTCTGGTTCA
LOC_Os09g25720
OsAffx.17895.1.S1_s_at--876--3771Chr09:15429947..15429971 (25 bp)
CTCTGGATCGAGGTCTGGCTCGGTC
LOC_Os09g25720
OsAffx.17895.1.S1_s_at--402--511Chr09:15429953..15429977 (25 bp)
ATCGAGGTCTGGCTCGGTCTCTGTA
LOC_Os09g25720
OsAffx.17895.1.S1_s_at--327--10051Chr09:15429986..15430010 (25 bp)
TAGTTCGTCGGCTGGGTCTAGCGCA
LOC_Os09g25720
OsAffx.17895.1.S1_s_at--435--9451Chr09:15429993..15430017 (25 bp)
TCGGCTGGGTCTAGCGCAGGTTCCT
LOC_Os09g25720
OsAffx.17895.1.S1_s_at--831--9991Chr09:15430004..15430028 (25 bp)
TAGCGCAGGTTCCTCCGCTGGGTCA
LOC_Os09g25720
OsAffx.17895.1.S1_s_at--451--4271Chr09:15430015..15430039 (25 bp)
CCTCCGCTGGGTCAGGTGGATCAAG
LOC_Os09g25720
OsAffx.17895.1.S1_s_at--337--571Chr09:15430046..15430070 (25 bp)
ATCCTCTGCTGGATCTTCAGCTGGA
LOC_Os09g25720
OsAffx.17895.1.S1_s_at--152--9571Chr09:15430059..15430083 (25 bp)
TCTTCAGCTGGATCTAGTGGCGGAT
LOC_Os09g25720
OsAffx.17895.1.S1_s_at--1114--10071Chr09:15430073..15430097 (25 bp)
TAGTGGCGGATCAGGATTAGGCATC
LOC_Os09g25720
OsAffx.17895.1.S1_s_at--383--3471Chr09:15430084..15430108 (25 bp)
CAGGATTAGGCATCGGATTTGGGCA
LOC_Os09g25720
Target Sequence 
CGTGTCCGTTTCTGGGTCTGGTTCAGGGTCTGGCTCGGCGGCTGGGGTTGGGTCCACCTCTGGATCGAGGTCTGGCTCGG
TCTCTGTAGGAGGGGCTAGTTCGTCGGCTGGGTCTAGCGCAGGTTCCTCCGCTGGGTCAGGTGGATCAAGGACGGGATCC
TCTGCTGGATCTTCAGCTGGATCTAGTGGCGGATCAGGATTAGGCATCGGATTTGGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17895.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis