Browse Element(s) Details


Os.49473.1.S1_at

Description gb:AK073882.1
DB_XREF= gi:32983905
TID=Os.49473.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.49473 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033073D14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033073D14, full insert sequence.
FL= gb:AK073882.1 gb:AK063811.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2564011/115' nucleotidase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g25610Os.55078.1.S1_at11/119+15380631..15383390glutamine amidotransferase class-I family protein, expressed
LOC_Os09g25620Os.11412.1.S1_a_at11/119+15384605..15388095S-adenosylmethionine decarboxylase proenzyme, putative, expressed
LOC_Os09g25620Os.12170.1.S1_at1/119+15384605..15388095S-adenosylmethionine decarboxylase proenzyme, putative, expressed
LOC_Os09g25630OsAffx.17893.1.S1_x_at11/119+15394296..15394811hypothetical protein
LOC_Os09g25630OsAffx.17893.1.S1_at11/119+15394296..15394811hypothetical protein
LOC_Os09g25640Os.49473.1.S1_at11/119+15399723..154054135' nucleotidase family protein, putative, expressed
LOC_Os09g25650OsAffx.17894.1.S1_at11/119+15407553..15414547GEX2, putative, expressed
LOC_Os09g25660NANA9+15415087..15416486transposon protein, putative, Pong sub-class
LOC_Os09g25670NANA9+15417299..15418558transposon protein, putative, Pong sub-class
LOC_Os09g25679NANA9+15418768..15419206NA
LOC_Os09g25690OsAffx.6397.1.S1_at11/119+15419769..15420566hypothetical protein
LOC_Os09g25700OsAffx.6398.1.S1_at11/119+15421387..15423389hypothetical protein
LOC_Os09g25710OsAffx.6399.1.S1_at11/119+15425337..15425864expressed protein
LOC_Os09g25720OsAffx.17895.1.S1_s_at11/119+15429675..15430148expressed protein
LOC_Os09g25720OsAffx.17895.1.S1_at11/119+15429675..15430148expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0008253molecular_function5'-nucleotidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49473.1.S1_at--1009--2891Chr09:15404877..15404900 (24 bp)
AAGGTCCCAGCGAGTTTGTTCAGTG
LOC_Os09g25640
Os.49473.1.S1_at--1140--10791Chr09:15404891..15404915 (25 bp)
TTGTTCAGTGGCTCGTAGCTCATTC
LOC_Os09g25640
Os.49473.1.S1_at--437--10011Chr09:15404906..15404930 (25 bp)
TAGCTCATTCTATCCATTTCCGATG
LOC_Os09g25640
Os.49473.1.S1_at--617--1811Chr09:15404943..15404967 (25 bp)
ACCCATTATGGTTTCTGTGTCCGAC
LOC_Os09g25640
Os.49473.1.S1_at--1156--6011Chr09:15404970..15404994 (25 bp)
GAGAGTATGAACTGCCATGCCACTG
LOC_Os09g25640
Os.49473.1.S1_at--289--3531Chr09:15404985..15405009 (25 bp)
CATGCCACTGCATCTGGTTAGCTGA
LOC_Os09g25640
Os.49473.1.S1_at--132--6271Chr09:15405062..15405086 (25 bp)
GATGTGGCTAGTGCTGCGATTGACA
LOC_Os09g25640
Os.49473.1.S1_at--603--3491Chr09:15405145..15405169 (25 bp)
CAGGCGTGGTTTTCTGTTTCCAAGA
LOC_Os09g25640
Os.49473.1.S1_at--649--9611Chr09:15405228..15405252 (25 bp)
TCATCCATCTTGTTTCTCATTGTTC
LOC_Os09g25640
Os.49473.1.S1_at--976--3751Chr09:15405243..15405267 (25 bp)
CTCATTGTTCTATTCTCCTTTTGGA
LOC_Os09g25640
Os.49473.1.S1_at--1007--791Chr09:15405325..15405349 (25 bp)
ATGGGTAATCCTTTTCCTTCAAGCT
LOC_Os09g25640
Target Sequence 
AAGGTCCCAGCGAGTTTGTTCAGTGGCTCGTAGCTCATTCTATCCATTTCCGATGGAGAACCGTAACACCCATTATGGTT
TCTGTGTCCGACCCGAGAGTATGAACTGCCATGCCACTGCATCTGGTTAGCTGATGAATAAAGCTTGGGTACACCCAACC
CAACATACGTGGCGCCAACTCAGCAAGATGTGGCTAGTGCTGCGATTGACAGAAGAGAAGTGATGGTTGTTATGTTCTGT
ACCGTTATTTGAGGATGATTTCGGTCTGACAGGCGTGGTTTTCTGTTTCCAAGACATCCAGAGGACTAAACAACCAACCA
AATGATGGTTGCTAATAAGAATTGTTTTCCAATCATCCATCTTGTTTCTCATTGTTCTATTCTCCTTTTGGATGAGATAT
GTAAAACACACATGATTCGTATTCCGTTAACAGTAAAATCTCCCAAATTATGGGTAATCCTTTTCCTTCAAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49473.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis