Browse Element(s) Details


OsAffx.17893.1.S1_x_at

Description tigr:9637.m02219
TID=OsAffx.17893.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2563011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g25610Os.55078.1.S1_at11/119+15380631..15383390glutamine amidotransferase class-I family protein, expressed
LOC_Os09g25620Os.11412.1.S1_a_at11/119+15384605..15388095S-adenosylmethionine decarboxylase proenzyme, putative, expressed
LOC_Os09g25620Os.12170.1.S1_at1/119+15384605..15388095S-adenosylmethionine decarboxylase proenzyme, putative, expressed
LOC_Os09g25630OsAffx.17893.1.S1_x_at11/119+15394296..15394811hypothetical protein
LOC_Os09g25630OsAffx.17893.1.S1_at11/119+15394296..15394811hypothetical protein
LOC_Os09g25640Os.49473.1.S1_at11/119+15399723..154054135' nucleotidase family protein, putative, expressed
LOC_Os09g25650OsAffx.17894.1.S1_at11/119+15407553..15414547GEX2, putative, expressed
LOC_Os09g25660NANA9+15415087..15416486transposon protein, putative, Pong sub-class
LOC_Os09g25670NANA9+15417299..15418558transposon protein, putative, Pong sub-class
LOC_Os09g25679NANA9+15418768..15419206NA
LOC_Os09g25690OsAffx.6397.1.S1_at11/119+15419769..15420566hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17893.1.S1_x_at--653--4611Chr09:15394757..15394781 (25 bp)
GCGAGTGGCGCTAACTTCCTTGCCA
LOC_Os09g25630
OsAffx.17893.1.S1_x_at--989--9811Chr09:15394746..15394770 (25 bp)
TAACTTCCTTGCCATCGTGGCCTCT
LOC_Os09g25630
OsAffx.17893.1.S1_x_at--574--6711Chr09:15394720..15394744 (25 bp)
GTTCGACTTGGCTGATTGATATGGT
LOC_Os09g25630
OsAffx.17893.1.S1_x_at--163--4111Chr09:15394717..15394741 (25 bp)
CGACTTGGCTGATTGATATGGTGAG
LOC_Os09g25630
OsAffx.17893.1.S1_x_at--651--3871Chr09:15394711..15394733 (23 bp)
CTGATTGATATGGTGAGCGGTAAAA
LOC_Os09g25630
OsAffx.17893.1.S1_x_at--71--10111Chr09:15394380..15394725 (25 bp)
TATGGTGAGCGGTAAAAGAGTTGAC
LOC_Os09g25630
OsAffx.17893.1.S1_x_at--885--2771Chr09:15394365..15394389 (25 bp)
AAGAGTTGACCAAGATTTCGACAAG
LOC_Os09g25630
OsAffx.17893.1.S1_x_at--629--6631Chr09:15394361..15394385 (25 bp)
GTTGACCAAGATTTCGACAAGAACA
LOC_Os09g25630
OsAffx.17893.1.S1_x_at--300--10271Chr09:15394350..15394374 (25 bp)
TTTCGACAAGAACAATAGTATCCAA
LOC_Os09g25630
OsAffx.17893.1.S1_x_at--726--10051Chr09:15394335..15394359 (25 bp)
TAGTATCCAAATCATGTGGCATCAT
LOC_Os09g25630
OsAffx.17893.1.S1_x_at--1112--2251Chr09:15394327..15394351 (25 bp)
AAATCATGTGGCATCATCGCCGTCC
LOC_Os09g25630
Target Sequence 
GCGAGTGGCGCTAACTTCCTTGCCATCGTGGCCTCTGGTTCGACTTGGCTGATTGATATGGTGAGCGGTAAAAGAGTTGA
CCAAGATTTCGACAAGAACAATAGTATCCAAATCATGTGGCATCATCGCCGTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17893.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis