Browse Element(s) Details


Os.11412.1.S1_a_at

Description gb:AK102445.1
DB_XREF= gi:32987654
TID=Os.11412.1
CNT=21
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.11412 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033093N21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033093N21, full insert sequence.
FL= gb:AK067682.1 gb:AK102445.1 gb:AK101535.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2562011/11S-adenosylmethionine decarboxylase proenzyme, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g25590Os.4635.1.S1_at11/119+15357372..15359696Tsi1-interacting protein TSIP1, putative, expressed
LOC_Os09g25600NANA9+15363890..15368113ovule development protein, putative
LOC_Os09g25610Os.55078.1.S1_at11/119+15380631..15383390glutamine amidotransferase class-I family protein, expressed
LOC_Os09g25620Os.11412.1.S1_a_at11/119+15384605..15388095S-adenosylmethionine decarboxylase proenzyme, putative, expressed
LOC_Os09g25620Os.12170.1.S1_at1/119+15384605..15388095S-adenosylmethionine decarboxylase proenzyme, putative, expressed
LOC_Os09g25630OsAffx.17893.1.S1_x_at11/119+15394296..15394811hypothetical protein
LOC_Os09g25630OsAffx.17893.1.S1_at11/119+15394296..15394811hypothetical protein
LOC_Os09g25640Os.49473.1.S1_at11/119+15399723..154054135' nucleotidase family protein, putative, expressed
LOC_Os09g25650OsAffx.17894.1.S1_at11/119+15407553..15414547GEX2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006596biological_processpolyamine biosynthesis
GO:0004014molecular_functionadenosylmethionine decarboxylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11412.1.S1_a_at--595--9571Chr09:15385264..15385288 (25 bp)
TCTTCGGTGGGCATGGTTTTGCCAA
LOC_Os09g25620
Os.11412.1.S1_a_at--136--8791Chr09:15385191..15385215 (25 bp)
TGTTGAGCAAGAGCTTCCTGGTGGC
LOC_Os09g25620
Os.11412.1.S1_a_at--436--7211Chr09:15385110..15385134 (25 bp)
GTCGACCTTGGATGGCTGGAACAGC
LOC_Os09g25620
Os.11412.1.S1_a_at--871--3431Chr09:15384987..15385011 (25 bp)
CAGTTCTTCAACCTCAAGTTGCAAG
LOC_Os09g25620
Os.11412.1.S1_a_at--241--10611Chr09:15384945..15384969 (25 bp)
TTCTGAGACGCCTTATTTGGTTCTG
LOC_Os09g25620
Os.11412.1.S1_a_at--907--2711Chr09:15384903..15384927 (25 bp)
AAGCAGCTGGCTGGGCTACCGGCAA
LOC_Os09g25620
Os.11412.1.S1_a_at--103--8731Chr09:15384844..15384868 (25 bp)
TGTCTGCCCAAATAAGTGCTCTAGA
LOC_Os09g25620
Os.11412.1.S1_a_at--348--1131Chr09:15384830..15384854 (25 bp)
AGTGCTCTAGATGGTTTGCTGCGTC
LOC_Os09g25620
Os.11412.1.S1_a_at--1048--4771Chr09:15384813..15384837 (25 bp)
GCTGCGTCTGCCATAGTGAGCAATT
LOC_Os09g25620
Os.11412.1.S1_a_at--691--6951Chr09:15384779..15384803 (25 bp)
GTAGAATTCTTATCTGTTGCCGATG
LOC_Os09g25620
Os.11412.1.S1_a_at--310--6691Chr09:15384764..15384788 (25 bp)
GTTGCCGATGCTCTTTAAGGGAGAA
LOC_Os09g25620
Target Sequence 
TCTTCGGTGGGCATGGTTTTGCCAAATCATGGGCAAAAGGTGCAGAGGTTGATTCCTACATGTGCGATGATCTTGTTGAG
CAAGAGCTTCCTGGTGGCGGTGTGCTGATGTATCAGAGTTTTACTGCTGTTACTCCTGGTGCTGTGTCACCGAGGTCGAC
CTTGGATGGCTGGAACAGCGATGGAGCAGAGATGGTTGCGAAGAGCAAAGAGATGAGTGTCTGCTGGGAAGGAGAGAAGG
CGGCGAAGAAGAAAGATGCAGATGCCTGAGAAATCNGCAGTTCTTCAACCTCAAGTTGCAAGTTTGATTCATCTGAAGTT
TCTGAGACGCCTTATTTGGTTCTGCTCTTGCNGTTTCGGTTAAGCAGCTGGCTGGGCTACCGGCAAAGCATATGTTACTT
GTTCATTGTTCTTTTATATCTGTCTGCCCAAATAAGTGCTCTAGATGGTTTGCTGCGTCTGCCATAGTGAGCAATTCAGA
TTGTAGTAGAATTCTTATCTGTTGCCGATGCTCTTTAAGGGAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11412.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis