Browse Element(s) Details


Os.55078.1.S1_at

Description gb:AK107431.1
DB_XREF= gi:32992640
TID=Os.55078.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55078 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-128-A07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-128-A07, full insert sequence.
FL= gb:AK107431.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2561011/11glutamine amidotransferase class-I family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g25590Os.4635.1.S1_at11/119+15357372..15359696Tsi1-interacting protein TSIP1, putative, expressed
LOC_Os09g25600NANA9+15363890..15368113ovule development protein, putative
LOC_Os09g25610Os.55078.1.S1_at11/119+15380631..15383390glutamine amidotransferase class-I family protein, expressed
LOC_Os09g25620Os.11412.1.S1_a_at11/119+15384605..15388095S-adenosylmethionine decarboxylase proenzyme, putative, expressed
LOC_Os09g25620Os.12170.1.S1_at1/119+15384605..15388095S-adenosylmethionine decarboxylase proenzyme, putative, expressed
LOC_Os09g25630OsAffx.17893.1.S1_x_at11/119+15394296..15394811hypothetical protein
LOC_Os09g25630OsAffx.17893.1.S1_at11/119+15394296..15394811hypothetical protein
LOC_Os09g25640Os.49473.1.S1_at11/119+15399723..154054135' nucleotidase family protein, putative, expressed
LOC_Os09g25650OsAffx.17894.1.S1_at11/119+15407553..15414547GEX2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55078.1.S1_at--472--6991Chr09:15381441..15381465 (25 bp)
GTACGCCAAGATCACGGAGGTGCAC
LOC_Os09g25610
Os.55078.1.S1_at--326--9371Chr09:15381530..15381554 (25 bp)
TCGAGATGTTCTGCGCCGGCGACCG
LOC_Os09g25610
Os.55078.1.S1_at--31--6471Chr09:15383047..15383071 (25 bp)
GATACTGGGCCTGACAGGGAGTTCT
LOC_Os09g25610
Os.55078.1.S1_at--555--7651Chr09:15383063..15383087 (25 bp)
GGGAGTTCTGGATCAAGCTGTGCAA
LOC_Os09g25610
Os.55078.1.S1_at--541--10171Chr09:15383130..15383154 (25 bp)
TATACCTTGTATTTGTAGCCTGTGA
LOC_Os09g25610
Os.55078.1.S1_at--791--931Chr09:15383174..15383198 (25 bp)
AGGCACAGATGCCTGTTGCTTCCTA
LOC_Os09g25610
Os.55078.1.S1_at--916--10711Chr09:15383189..15383213 (25 bp)
TTGCTTCCTAGTTTGTGCTGGTAGT
LOC_Os09g25610
Os.55078.1.S1_at--548--7471Chr09:15383260..15383284 (25 bp)
GTGTGTTGAAAGTCTCTATCACCAG
LOC_Os09g25610
Os.55078.1.S1_at--598--3691Chr09:15383275..15383299 (25 bp)
CTATCACCAGTGTTGACCTGCAAAA
LOC_Os09g25610
Os.55078.1.S1_at--512--2351Chr09:15383311..15383335 (25 bp)
AAAGCTTGATTTTCAGGTCATCTGG
LOC_Os09g25610
Os.55078.1.S1_at--530--8671Chr09:15383341..15383365 (25 bp)
TGTGTGGAATTTTGCATGCTCATGC
LOC_Os09g25610
Target Sequence 
GTACGCCAAGATCACGGAGGTGCACCAGGATGAGGTGTGGGAGCTGCCGGCGGGCGCCGAGGTGCTCGCCTCCTCGTCCA
AGACCGGCGTCGAGATGTTCTGCGCCGGCGACCGCGTGCTCGGCATCCAGGGCCACCCGGAGTACACCGCCGACATCCTC
CTCAACCTCGTCGACCGCCTCTCCTCCGCTGGATCCATCACCATGGCGGTCGCAGAGGGAGTGAGGAGGCAGCTGGAGGA
TACTGGGCCTGACAGGGAGTTCTGGATCAAGCTGTGCAAAAGCTTCCTCAAGGCTGAAGAAGAATAACAACTATTGACAT
ATATACCTTGTATTTGTAGCCTGTGATATGTGTTATGACAGTGTGAGGCACAGATGCCTGTTGCTTCCTAGTTTGTGCTG
GTAGTGGTAGGCACAGATGCTCACTTTTAGCATCAAATTTATTGTGAATCAGTGTGTTGAAAGTCTCTATCACCAGTGTT
GACCTGCAAAATTGGAATAAACAAAGCTTGATTTTCAGGTCATCTGGTTATGTGTGTGGAATTTTGCATGCTCATGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55078.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis