Browse Element(s) Details


OsAffx.6398.1.S1_at

Description tigr:9637.m02226
TID=OsAffx.6398.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2570011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g25640Os.49473.1.S1_at11/119+15399723..154054135' nucleotidase family protein, putative, expressed
LOC_Os09g25650OsAffx.17894.1.S1_at11/119+15407553..15414547GEX2, putative, expressed
LOC_Os09g25660NANA9+15415087..15416486transposon protein, putative, Pong sub-class
LOC_Os09g25670NANA9+15417299..15418558transposon protein, putative, Pong sub-class
LOC_Os09g25679NANA9+15418768..15419206NA
LOC_Os09g25690OsAffx.6397.1.S1_at11/119+15419769..15420566hypothetical protein
LOC_Os09g25700OsAffx.6398.1.S1_at11/119+15421387..15423389hypothetical protein
LOC_Os09g25710OsAffx.6399.1.S1_at11/119+15425337..15425864expressed protein
LOC_Os09g25720OsAffx.17895.1.S1_s_at11/119+15429675..15430148expressed protein
LOC_Os09g25720OsAffx.17895.1.S1_at11/119+15429675..15430148expressed protein
LOC_Os09g25730NANA9+15430738..15432537transposon protein, putative, unclassified
LOC_Os09g25740OsAffx.30020.1.A1_at11/119+15437140..15439298expressed protein
LOC_Os09g25740Os.52395.1.S1_x_at11/119+15437140..15439298expressed protein
LOC_Os09g25740Os.52395.1.S1_at11/119+15437140..15439298expressed protein
LOC_Os09g25760Os.6961.1.S1_a_at11/119+15443235..15445530senescence-associated protein DH, putative, expressed
LOC_Os09g25770Os.49485.1.S1_at10/119+15446684..15448981Integral membrane protein DUF6 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006869biological_processlipid transport
GO:0008289molecular_functionlipid binding
GO:0016298molecular_functionlipase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6398.1.S1_at--1020--1431Chr09:15422819..15422843 (25 bp)
AGAAGCTGATCCTAAGCCTGGACTT
LOC_Os09g25700
OsAffx.6398.1.S1_at--500--9771Chr09:15422831..15422855 (25 bp)
TAAGCCTGGACTTGATCCGGAGCCA
LOC_Os09g25700
OsAffx.6398.1.S1_at--56--5631Chr09:15422856..15422880 (25 bp)
GACACGAATGTTGAACCGGACCTTG
LOC_Os09g25700
OsAffx.6398.1.S1_at--1128--5831Chr09:15422874..15422898 (25 bp)
GACCTTGAACTTGAGCCAGAACCAC
LOC_Os09g25700
OsAffx.6398.1.S1_at--331--2951Chr09:15422942..15422966 (25 bp)
AAGGCCTCCTGATCCTGAGCCTAAA
LOC_Os09g25700
OsAffx.6398.1.S1_at--186--2631Chr09:15422977..15423001 (25 bp)
AACCTGACCCTGAGCTAGAACCTGA
LOC_Os09g25700
OsAffx.6398.1.S1_at--474--2891Chr09:15423098..15423122 (25 bp)
AAGGTCCTTCCTTGCAAAGCGGCTC
LOC_Os09g25700
OsAffx.6398.1.S1_at--810--2851Chr09:15423137..15423161 (25 bp)
AAGTGATGCAGCAACGGCAACCAAA
LOC_Os09g25700
OsAffx.6398.1.S1_at--236--8131Chr09:15423176..15423200 (25 bp)
GGACTTCGTGCAAACCATTGTACTA
LOC_Os09g25700
OsAffx.6398.1.S1_at--8--3271Chr09:15423217..15423241 (25 bp)
CAACAGCTACTATACTTCGTGCTAG
LOC_Os09g25700
OsAffx.6398.1.S1_at--536--7751Chr09:15423263..15423287 (25 bp)
GGTGTTTGATAGACCTCATGGGAAT
LOC_Os09g25700
Target Sequence 
AGAAGCTGATCCTAAGCCTGGACTTGATCCGGAGCCAGACACGAATGTTGAACCGGACCTTGAACTTGAGCCAGAACCAC
CGCCACCTAGACCAATGCCAATTCCAACTCCAAGTCCAAGGCCAAGGCCTCCTGATCCTGAGCCTAAACCAGACCCCGAA
CCTGACCCTGAGCTAGAACCTGAGCCAGAACCTGAGCCAGATCCCGAACCTGAACCTGAGCCACCTACTCCTAAACCTAT
ACCAACTCCAATCCCAAGTCCACCCCCAAGGTTAATACCAAGGTCCTTCCTTGCAAAGCGGCTCTCCCCCACCGGAGCAA
GTGATGCAGCAACGGCAACCAAAACTACAAAAGCAATGGACTTCGTGCAAACCATTGTACTATATTGTTTGCAACACGCA
ACAGCTACTATACTTCGTGCTAGTAATGGAGATGAGATGATGCAGGTGTTTGATAGACCTCATGGGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6398.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis