Browse Element(s) Details


OsAffx.17900.1.S1_at

Description tigr:9637.m02253
TID=OsAffx.17900.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=glutamate receptor protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2594011/11Receptor family ligand binding region containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g25910OsAffx.30026.1.S1_at11/119+15558430..15559764Basic 7S globulin precursor, putative
LOC_Os09g25920OsAffx.30027.1.S1_at11/119+15563062..15568469Receptor family ligand binding region containing protein, expressed
LOC_Os09g25930OsAffx.17899.1.S1_at10/119+15572825..15574398Ligand-gated ion channel family protein
LOC_Os09g25940OsAffx.17900.1.S1_at11/119+15575817..15579333Receptor family ligand binding region containing protein
LOC_Os09g25950Os.53948.1.S1_at11/119+15582193..15585474expressed protein
LOC_Os09g25960OsAffx.30030.1.S1_x_at11/119+15587269..15593377Receptor family ligand binding region containing protein
LOC_Os09g25970OsAffx.30029.1.S1_at11/119+15596968..15597719hypothetical protein
LOC_Os09g25980OsAffx.6401.1.S1_at9/119+15598148..15605591Receptor family ligand binding region containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006874biological_processcalcium ion homeostasis
GO:0009416biological_processresponse to light stimulus
GO:0005217molecular_functionintracellular ligand-gated ion channel activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17900.1.S1_at--1090--5591Chr09:15576363..15576387 (25 bp)
GACAAGCTTGAAAGTCCCCAAAGAA
LOC_Os09g25940
OsAffx.17900.1.S1_at--437--8431Chr09:15576329..15576353 (25 bp)
GGCCTCAAGTTCCTCAATGCAATTT
LOC_Os09g25940
OsAffx.17900.1.S1_at--4--1071Chr09:15576281..15576305 (25 bp)
AGTGGTTACTTTGACCTTTCTGGCA
LOC_Os09g25940
OsAffx.17900.1.S1_at--777--5831Chr09:15576269..15576293 (25 bp)
GACCTTTCTGGCAGGCAATTGCAGC
LOC_Os09g25940
OsAffx.17900.1.S1_at--48--3191Chr09:15576254..15576278 (25 bp)
CAATTGCAGCCTTCCACATTTCAAA
LOC_Os09g25940
OsAffx.17900.1.S1_at--944--1271Chr09:15576201..15576225 (25 bp)
AGATGTTGGGTTTTGGACTGCACAA
LOC_Os09g25940
OsAffx.17900.1.S1_at--63--6551Chr09:15576172..15576196 (25 bp)
GATTTTCACAGCGATTAACCAGACC
LOC_Os09g25940
OsAffx.17900.1.S1_at--79--2371Chr09:15576120..15576144 (25 bp)
AAAGCCTGACCTAAACCCTGTGATT
LOC_Os09g25940
OsAffx.17900.1.S1_at--604--10131Chr09:15576022..15576046 (25 bp)
TATGCACAAGTGATGGATACCCAGA
LOC_Os09g25940
OsAffx.17900.1.S1_at--377--1471Chr09:15575983..15576007 (25 bp)
AGAAGGATCCTCTTATCGTGGGTAT
LOC_Os09g25940
OsAffx.17900.1.S1_at--580--10131Chr09:15575900..15575924 (25 bp)
TATGCACTCCCTTATGAATATGTAT
LOC_Os09g25940
Target Sequence 
GACAAGCTTGAAAGTCCCCAAAGAAACTGAAAATGGCCTCAAGTTCCTCAATGCAATTTTGCAGTATAAATTTAGGGGTT
TGAGTGGTTACTTTGACCTTTCTGGCAGGCAATTGCAGCCTTCCACATTTCAAATAATAAATATAGTTGGGAAAGGATGG
AGAGATGTTGGGTTTTGGACTGCACAAGATGGATTTTCACAGCGATTAACCAGACCAAGATCAAATGGGACATATTTAAG
TACAAAGCCTGACCTAAACCCTGTGATTTGGCCAGGAGAATCTACAAATATACCTAGGGGCTGGGAAATTCCAACGAGTG
GAAAGAAGCTTCAGGTTGGTGTATGCACAAGTGATGGATACCCAGAGTATATATACGCTGAGAAGGATCCTCTTATCGTG
GGTATGACTAAAGCAAGTGGCCTTGCAATTGAAGTGTTTGAAGAGACAGTAAAGAGGCTTCCTTATGCACTCCCTTATGA
ATATGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17900.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis