Browse Element(s) Details


OsAffx.17933.1.S1_at

Description tigr:9637.m02409
TID=OsAffx.17933.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=homeobox-leucine zipper protein hat14 (hd-zip protein 14)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2745011/11Homeobox associated leucine zipper family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g27400OsAffx.30057.1.S1_at10/119+16647821..16649401expressed protein
LOC_Os09g27410NANA9+16652112..16652372hypothetical protein
LOC_Os09g27420Os.14842.1.S1_at11/119+16653815..16657634Formate-tetrahydrofolate ligase, putative, expressed
LOC_Os09g27430OsAffx.6415.1.S1_at11/119+16658578..16659351hypothetical protein
LOC_Os09g27440OsAffx.17932.1.S1_at11/119+16659907..16660425hypothetical protein
LOC_Os09g27450OsAffx.17933.1.S1_at11/119+16673597..16675209Homeobox associated leucine zipper family protein, expressed
LOC_Os09g27450Os.49759.1.S1_x_at10/119+16673597..16675209Homeobox associated leucine zipper family protein, expressed
LOC_Os09g27460NANA9+16680045..16680362retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g27470NANA9+16681896..16684189retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g27480Os.29072.1.S1_at11/119+16695170..16696422expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009735biological_processresponse to cytokinin stimulus
GO:0040029biological_processregulation of gene expression, epigenetic
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17933.1.S1_at--190--2771Chr09:16674096..16674120 (25 bp)
AAGACGGTGCACCCCTTCTACATGC
LOC_Os09g27450
OsAffx.17933.1.S1_at--887--5771Chr09:16673815..16673839 (25 bp)
GACGAGCTCGTGACTCTTCCAACTC
LOC_Os09g27450
OsAffx.17933.1.S1_at--145--7571Chr09:16673775..16673799 (25 bp)
GGGCCTGTTTGTAAATTCGCTCACT
LOC_Os09g27450
OsAffx.17933.1.S1_at--278--2251Chr09:16673763..16673787 (25 bp)
AAATTCGCTCACTTTTCTTTTATCG
LOC_Os09g27450
OsAffx.17933.1.S1_at--936--9291Chr09:16673759..16673783 (25 bp)
TCGCTCACTTTTCTTTTATCGTTTT
LOC_Os09g27450
OsAffx.17933.1.S1_at--663--8632Chr09:2219498..2219753 (25 bp)
TGGGATTTTTTGTGGCTTGCCAAGT
NONE
OsAffx.17933.1.S1_at--718--8471Chr09:16673697..16673721 (25 bp)
TGGCTTGCCAAGTGGTTTAGCGAGA
LOC_Os09g27450
OsAffx.17933.1.S1_at--624--4371Chr09:16673691..16673715 (25 bp)
GCCAAGTGGTTTAGCGAGAATCCGA
LOC_Os09g27450
OsAffx.17933.1.S1_at--484--4131Chr09:16673658..16673682 (25 bp)
CGCGTCTGGCCGTCCGATTGGGACA
LOC_Os09g27450
OsAffx.17933.1.S1_at--823--8451Chr09:16673652..16673676 (25 bp)
TGGCCGTCCGATTGGGACACGTCGA
LOC_Os09g27450
OsAffx.17933.1.S1_at--705--10771Chr09:16673641..16673665 (25 bp)
TTGGGACACGTCGACGGCGCACGAT
LOC_Os09g27450
Target Sequence 
AAGACGGTGCACCCCTTCTACATGCACCTCCCGGCGACGACACTCTCCATGTGCCCCTCCTGCGAGCGCGTCGCCTCCAA
CTCCGCCCCGGCCACCGCCTCCTCCGCCGCAACATCGTCGACGGCCGCGCCGCCCGCGGCACCCTCATCCGGCGGCATTG
CGGCCACCTCCTCCTCCGCCGCCGCCGCCGCGGCGCCGGACCACAGGCCGTCGTCGTTCGCCGCGCTGTTCTCGTCGCCG
CGTGGCTTCCCGCTATCCGTAGCCCCGCAGGCGCAGCCGCCGACGAGCTCGTGACTCTTCCAACTCTCCGGCGACGGCGA
GGGGCCTGTTTGTAAATTCGCTCACTTTTCTTTTATCGTTTTTTTTTGTTTTGCTCCTTTGGTTCTTTGGGATTTTTTGT
GGCTTGCCAAGTGGTTTAGCGAGAATCCGAGGGGGCAGCGCGTCTGGCCGTCCGATTGGGACACGTCGACGGCGCACGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17933.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis