Browse Element(s) Details


OsAffx.17998.1.S1_at

Description tigr:9637.m02980
TID=OsAffx.17998.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3556011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g35530NANA9+20415020..20419994hypothetical protein
LOC_Os09g35540Os.5704.1.S1_at11/119+20422660..20424602expressed protein
LOC_Os09g35550OsAffx.17997.1.S1_at11/119+20429967..20431440hypothetical protein
LOC_Os09g35550OsAffx.17997.1.S1_x_at10/119+20429967..20431440hypothetical protein
LOC_Os09g35560OsAffx.17998.1.S1_at11/119+20434121..20434514hypothetical protein
LOC_Os09g35570NANA9+20435985..20439435hypothetical protein
LOC_Os09g35580OsAffx.4557.1.S1_s_at1/119+20450238..20450736hypothetical protein
LOC_Os09g35590OsAffx.6484.1.S1_at11/119+20456609..20457019hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17998.1.S1_at--699--7651Chr09:20434441..20434465 (25 bp)
GGGAGGCCGCCAAATCTAAGCTGAA
LOC_Os09g35560
OsAffx.17998.1.S1_at--212--9531Chr09:20434427..20434451 (25 bp)
TCTAAGCTGAAGCAGGCCGACGACC
LOC_Os09g35560
OsAffx.17998.1.S1_at--788--3271Chr09:20434380..20434404 (25 bp)
CAACACCGATGATGACCACTGGCAT
LOC_Os09g35560
OsAffx.17998.1.S1_at--1052--6291Chr09:20434373..20434397 (25 bp)
GATGATGACCACTGGCATCGCGACT
LOC_Os09g35560
OsAffx.17998.1.S1_at--486--8491Chr09:20434361..20434385 (25 bp)
TGGCATCGCGACTCCGGCAACTGGC
LOC_Os09g35560
OsAffx.17998.1.S1_at--521--1951Chr09:20434342..20434366 (25 bp)
ACTGGCGCTACAAGAGACGAAGCAG
LOC_Os09g35560
OsAffx.17998.1.S1_at--261--9251Chr09:20434276..20434300 (25 bp)
TCCTTGCCGTGATGGGTCAGCCTAC
LOC_Os09g35560
OsAffx.17998.1.S1_at--462--811Chr09:20434265..20434289 (25 bp)
ATGGGTCAGCCTACGCGCTGCAGCT
LOC_Os09g35560
OsAffx.17998.1.S1_at--763--3031Chr09:20434235..20434259 (25 bp)
AATCCTTCCTGGATGTTCAGCAGAA
LOC_Os09g35560
OsAffx.17998.1.S1_at--480--5271Chr09:20434170..20434237 (25 bp)
GAATGCCCAGATTCTACATACTAGA
LOC_Os09g35560
OsAffx.17998.1.S1_at--999--2011Chr09:20434151..20434175 (25 bp)
ACTAGAGTCTTATGTATTTCCTGGA
LOC_Os09g35560
Target Sequence 
GGGAGGCCGCCAAATCTAAGCTGAAGCAGGCCGACGACCCCCCCTCCCCTTCCCCTCCTCCCAACACCGATGATGACCAC
TGGCATCGCGACTCCGGCAACTGGCGCTACAAGAGACGAAGCAGGGAAGATGAAGCTGCCCCGCCGCCCTTAGGGGAGGA
CCTCCTCCTTGCCGTGATGGGTCAGCCTACGCGCTGCAGCTTCCTCAATCCTTCCTGGATGTTCAGCAGAATGCCCAGAT
TCTACATACTAGAGTCTTATGTATTTCCTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17998.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis