Browse Element(s) Details


OsAffx.18022.1.S1_at

Description tigr:9637.m03137
TID=OsAffx.18022.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3707011/11pentatricopeptide, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g37020Os.11211.1.S1_at11/119+21354735..21357365expressed protein
LOC_Os09g37040OsAffx.30162.1.S1_at11/119+21365910..21369912expressed protein
LOC_Os09g37050Os.51002.1.S1_at10/119+21370433..21371895RING-H2 finger protein ATL2B, putative, expressed
LOC_Os09g37060OsAffx.30725.5.S1_x_at11/119+21375332..21377938transposon protein, putative, unclassified, expressed
LOC_Os09g37070OsAffx.18022.1.S1_at11/119+21381175..21382806pentatricopeptide, putative
LOC_Os09g37080Os.53581.1.S1_at11/119+21385537..21386617expressed protein
LOC_Os09g37090OsAffx.30163.1.S1_at11/119+21389834..21390046hypothetical protein
LOC_Os09g37100Os.11408.1.S2_at11/119+21391293..21397466Phospholipase D delta, putative, expressed
LOC_Os09g37100Os.11408.1.S1_at10/119+21391293..21397466Phospholipase D delta, putative, expressed
LOC_Os09g37110OsAffx.30164.1.S1_at11/119+21398391..21401460hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18022.1.S1_at--924--5871Chr09:21381732..21381756 (25 bp)
GAGCCCGACATTATCACATACAATT
LOC_Os09g37070
OsAffx.18022.1.S1_at--103--6351Chr09:21381666..21381690 (25 bp)
GATGCTGCGATGAAAATGCTCACAA
LOC_Os09g37070
OsAffx.18022.1.S1_at--61--6591Chr09:21381637..21381661 (25 bp)
GATTGCCAAGGGTTGCATTCCTGAT
LOC_Os09g37070
OsAffx.18022.1.S1_at--628--91Chr09:21381621..21381645 (25 bp)
ATTCCTGATTGCCACACATTTAACC
LOC_Os09g37070
OsAffx.18022.1.S1_at--299--10491Chr09:21381602..21381626 (25 bp)
TTAACCCCATGCTGAAACTGGTGCT
LOC_Os09g37070
OsAffx.18022.1.S1_at--150--2571Chr09:21381587..21381611 (25 bp)
AACTGGTGCTTGTGCTTGGCAATGT
LOC_Os09g37070
OsAffx.18022.1.S1_at--217--7351Chr09:21381520..21381544 (25 bp)
GTGCAAGCCAAATGTCGTCACATAT
LOC_Os09g37070
OsAffx.18022.1.S1_at--462--2291Chr09:21381406..21381430 (25 bp)
AAATGTGAATACTTACGCTGCTCTA
LOC_Os09g37070
OsAffx.18022.1.S1_at--145--7351Chr09:21381347..21381371 (25 bp)
GTGCACACATGACGCTGAGGGAAAT
LOC_Os09g37070
OsAffx.18022.1.S1_at--979--9811Chr09:21381304..21381328 (25 bp)
TAAACCCACAAAGCCAGTCTATGAT
LOC_Os09g37070
OsAffx.18022.1.S1_at--903--10111Chr09:21381285..21381309 (25 bp)
TATGATATGGTATTGGCCCTGTTGA
LOC_Os09g37070
Target Sequence 
GAGCCCGACATTATCACATACAATTTCTTGATGGAGACACATTGTGGGAAGGGGCAGAGTAACCTTGATGCTGCGATGAA
AATGCTCACAAGGATGATTGCCAAGGGTTGCATTCCTGATTGCCACACATTTAACCCCATGCTGAAACTGGTGCTTGTGC
TTGGCAATGTAAATGCTGCCCGGAAATTGTATGAGCGGATGCAGGAGCTGCAGTGCAAGCCAAATGTCGTCACATATAAT
TTGCTTATGAGATTGTTCAATTTGGAGAAGTCAATGGACATGGTGCTGAGGATAAAGAAGGACATGGATGCACAGGGAGT
GGAGCCAAATGTGAATACTTACGCTGCTCTAATAGAGGCCTTCTGTGGAAGGGGAAACTGGAAACGTGCACACATGACGC
TGAGGGAAATGGTTGAGGAGAAAGCCCTTAAACCCACAAAGCCAGTCTATGATATGGTATTGGCCCTGTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18022.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis