Browse Element(s) Details


OsAffx.18057.1.S1_at

Description tigr:9637.m03363
TID=OsAffx.18057.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3933011/11retrotransposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g39290NANA9+22579232..22585387retrotransposon protein, putative, unclassified
LOC_Os09g39300NANA9+22586033..22589305retrotransposon protein, putative, unclassified
LOC_Os09g39310Os.16898.2.S1_at11/119+22594097..22596947expressed protein
LOC_Os09g39320OsAffx.30205.1.S1_at11/119+22598493..22607817CTR1-like protein kinase, putative, expressed
LOC_Os09g39330OsAffx.18057.1.S1_at11/119+22609915..22619148retrotransposon protein, putative, unclassified, expressed
LOC_Os09g39334Os.53474.1.S1_at10/119+22622263..22623247expressed protein
LOC_Os09g39340OsAffx.30206.1.S1_at10/119+22624664..22627016hypothetical protein
LOC_Os09g39350Os.12214.1.S1_at11/119+22630629..22633014expressed protein
LOC_Os09g39360Os.52790.1.S1_at11/119+22634997..22637833expressed protein
LOC_Os09g39370OsAffx.30207.1.S1_at11/119+22638131..22640118hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18057.1.S1_at--111--5331Chr09:22613001..22613025 (25 bp)
GAAGGGCTCTCCCTTATTCTTCAAA
LOC_Os09g39330
OsAffx.18057.1.S1_at--622--6551Chr09:22613095..22613119 (25 bp)
GATTATCTTGGCTCACATGTGTTCT
LOC_Os09g39330
OsAffx.18057.1.S1_at--542--8611Chr09:22613191..22613215 (25 bp)
TGGGTGAAACCTTTCTCCACTGTAC
LOC_Os09g39330
OsAffx.18057.1.S1_at--226--6611Chr09:22613239..22613263 (25 bp)
GATTGGACAATTGGCCCCATGAGTA
LOC_Os09g39330
OsAffx.18057.1.S1_at--468--8271Chr09:22613273..22613297 (25 bp)
GGCAGGAGTCCATCTATTACAAGGT
LOC_Os09g39330
OsAffx.18057.1.S1_at--569--1171Chr09:22613345..22613369 (25 bp)
AGTACTGGCCCAATTACGGTGACCT
LOC_Os09g39330
OsAffx.18057.1.S1_at--1098--7751Chr09:22613362..22613386 (25 bp)
GGTGACCTGCTAAGTTTTATCCGTA
LOC_Os09g39330
OsAffx.18057.1.S1_at--712--8911Chr09:22613529..22613553 (25 bp)
TGAGCTCTTTGCATCCAACAGTTAC
LOC_Os09g39330
OsAffx.18057.1.S1_at--760--2111Chr09:22613546..22613570 (25 bp)
ACAGTTACCAAGATTTTCTCCCACA
LOC_Os09g39330
OsAffx.18057.1.S1_at--1149--9491Chr09:22613562..22613586 (25 bp)
TCTCCCACAATTTCTGCAGCGTGTT
LOC_Os09g39330
OsAffx.18057.1.S1_at--30--1631Chr09:22613579..22613603 (25 bp)
AGCGTGTTTCTTCAGCCTGTCTAAT
LOC_Os09g39330
Target Sequence 
GAAGGGCTCTCCCTTATTCTTCAAACAATTGAAGGACGATGTGACCCTTACATCTAGAACATTGGTCAGTGCTAGTGATT
GGGAATGGTTCTGGGATTATCTTGGCTCACATGTGTTCTATATGCCTCCAGTCGCTCGACTGCATCTTATCAAAGACCTC
TTTGTGGCTATCAAAACATTCAAATTGACTTGGGTGAAACCTTTCTCCACTGTACTTCTAGATTTTACTGAATTTGGTGA
TTGGACAATTGGCCCCATGAGTAAGACAGATGGGCAGGAGTCCATCTATTACAAGGTTTTTTGGCACAAGGTTAAGCCGG
AGGATATTGATCCAAAAAACCCAAAGTACTGGCCCAATTACGGTGACCTGCTAAGTTTTATCCGTAATCTGATTGAACAT
TTGGATGAACACAAACACGAGGAGAATATTACTGATATTGTTGACGCTGAGCTCTTTGCATCCAACAGTTACCAAGATTT
TCTCCCACAATTTCTGCAGCGTGTTTCTTCAGCCTGTCTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18057.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis