Browse Element(s) Details


OsAffx.18060.1.S1_at

Description tigr:9637.m03393
TID=OsAffx.18060.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3960011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g39550Os.4188.1.S1_at11/119+22702884..22705225expressed protein
LOC_Os09g39560Os.7132.1.S1_at11/119+22707156..22709078Genetic modifier, putative, expressed
LOC_Os09g39570Os.5640.1.S1_at11/119+22712810..22716059Beta-amylase, putative, expressed
LOC_Os09g39580Os.52848.1.S1_at11/119+22716267..22719449expressed protein
LOC_Os09g39590Os.49318.1.S1_at11/119+22719823..22727019Cleavage and polyadenylation specificity factor, 100 kDa subunit, putative, expressed
LOC_Os09g39600OsAffx.18060.1.S1_at11/119+22729270..22730277hypothetical protein
LOC_Os09g39610Os.23699.1.A1_at2/119+22731580..22732191hypothetical protein
LOC_Os09g39620OsAffx.6534.1.S1_at11/119+22736078..22740681U-box domain containing protein, expressed
LOC_Os09g39630OsAffx.30212.1.S1_at11/119+22741663..22742696hypothetical protein
LOC_Os09g39640Os.37396.1.A1_at10/119+22746876..22751726U-box domain containing protein, expressed
LOC_Os09g39650Os.50881.1.S1_x_at11/119+22752886..22757022Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18060.1.S1_at--554--9891Chr09:22729390..22729414 (25 bp)
TACTTTGCCGATATCTGCAACGCCA
LOC_Os09g39600
OsAffx.18060.1.S1_at--875--7551Chr09:22729431..22729455 (25 bp)
GGGCCATGAAATCCCTCGGATGACT
LOC_Os09g39600
OsAffx.18060.1.S1_at--767--4651Chr09:22729870..22729894 (25 bp)
GCGTCGTGCTTGTCAATGTGCTTCA
LOC_Os09g39600
OsAffx.18060.1.S1_at--166--2991Chr09:22729884..22729908 (25 bp)
AATGTGCTTCATGACCAACCTGCGC
LOC_Os09g39600
OsAffx.18060.1.S1_at--517--6711Chr09:22729972..22729996 (25 bp)
GTTCGTGACATTGCCATCGACTTAG
LOC_Os09g39600
OsAffx.18060.1.S1_at--43--4751Chr09:22730061..22730085 (25 bp)
GCTGATGGCTGGACGGCCGCTAAAT
LOC_Os09g39600
OsAffx.18060.1.S1_at--544--3731Chr09:22730080..22730104 (25 bp)
CTAAATGGAGTTGGTTGCTGGCGCA
LOC_Os09g39600
OsAffx.18060.1.S1_at--1131--6691Chr09:22730120..22730144 (25 bp)
GTTCCTCTCAAATCTCACATCATAT
LOC_Os09g39600
OsAffx.18060.1.S1_at--615--411Chr09:22730138..22730162 (25 bp)
ATCATATGATGCCTACCCTGCCAAA
LOC_Os09g39600
OsAffx.18060.1.S1_at--767--9411Chr09:22730178..22730202 (25 bp)
TCGTCCTCAACCAAGCTTGCAAAAG
LOC_Os09g39600
OsAffx.18060.1.S1_at--211--2431Chr09:22730198..22730222 (25 bp)
AAAAGCTCCATGTGGGTCATCCCGT
LOC_Os09g39600
Target Sequence 
TACTTTGCCGATATCTGCAACGCCACCTCCAAAACAAGGGAGGGCCATGAAATCCCTCGGATGACTTTGCCCCTCCTGGC
CTCATGGGTTTCGCTGACCTTTGGCGTGGCGTCGTGCTTGTCAATGTGCTTCATGACCAACCTGCGCCAAGCTACATCCC
ATTGCCTCCACGAATCAGGCATAGGCATTGACGAGGGCAACGCAAGCGATGTTCGTGACATTGCCATCGACTTAGAGGGT
TGCATCAACTATGTTGAGTTTGAGTTCAAAGGCCTTCCACACCCGCAGAGAGACACATTGCTGATGGCTGGACGGCCGCT
AAATGGAGTTGGTTGCTGGCGCATGGACTGCCGCCTACGTTCCTCTCAAATCTCACATCATATGATGCCTACCCTGCCAA
ACTACGACACTGCCCGTCGTCCTCAACCAAGCTTGCAAAAGCTCCATGTGGGTCATCCCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18060.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis