Browse Element(s) Details


OsAffx.18078.1.S1_at

Description tigr:9638.m00082
TID=OsAffx.18078.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Putative helicase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0178011/11AT hook motif-containing protein, putative
LOC_Os03g315604/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g01750OsAffx.437.1.S1_x_at11/1110+466831..471811retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g01750OsAffx.437.1.S1_at11/1110+466831..471811retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g01760OsAffx.30233.1.S1_at11/1110+473086..473619Peroxidase 53 precursor, putative
LOC_Os10g01770OsAffx.940.1.S1_x_at1/1110+484511..491354transposon protein, putative, unclassified
LOC_Os10g01780OsAffx.18078.1.S1_at11/1110+493773..494781AT hook motif-containing protein, putative
LOC_Os10g01790OsAffx.8572.1.S1_s_at11/1110+505357..508904transposon protein, putative, Mutator sub-class
LOC_Os10g01790OsAffx.8572.1.S1_at11/1110+505357..508904transposon protein, putative, Mutator sub-class
LOC_Os10g01800OsAffx.30234.1.S1_at11/1110+510294..511478Transferase family protein
LOC_Os10g01810OsAffx.6549.1.S1_at11/1110+512470..512873hypothetical protein
LOC_Os10g01820Os.54284.1.A1_at11/1110+513590..517749expressed protein
LOC_Os10g01820Os.14574.1.S1_at1/1110+513590..517749expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18078.1.S1_at--702--7091Chr10:494342..494366 (25 bp)
GTCAAAAGCACTTCTGCTATCACGA
LOC_Os10g01780
OsAffx.18078.1.S1_at--1001--10452Chr03:17959221..17959241 (21 bp)
TTACCTAAGTTACGTCCTCCTCCTG
NONE
OsAffx.18078.1.S1_at--1139--3191Chr10:494149..494173 (25 bp)
CAATGGGTGCTACTGTTGACAAATC
LOC_Os10g01780
OsAffx.18078.1.S1_at--28--5092Chr03:17959429..17959453 (25 bp)
GCACCACCGAATTGGTACTCTTGTG
LOC_Os03g31560
OsAffx.18078.1.S1_at--450--6411Chr10:494050..494074 (25 bp)
GATCTCGTGGTTCACCTCCGAAATT
LOC_Os10g01780
OsAffx.18078.1.S1_at--835--10511Chr10:494040..494064 (25 bp)
TTCACCTCCGAAATTCGCTCAATTA
LOC_Os10g01780
OsAffx.18078.1.S1_at--925--1251Chr10:493938..493962 (25 bp)
AGATTCTGAAATACTTGCTGCCCTG
LOC_Os10g01780
OsAffx.18078.1.S1_at--603--332Chr03:17959577..17959797 (25 bp)
ATACTTGCTGCCCTGTCATTGATGT
LOC_Os03g31560
OsAffx.18078.1.S1_at--975--5452Chr03:17959646..17959670 (25 bp)
GAACGTCTTTCTGAACATGGTGATC
LOC_Os03g31560
OsAffx.18078.1.S1_at--302--7412Chr03:17959665..17959688 (24 bp)
GTGATCAGCAAATAACCCTTCGCCG
LOC_Os03g31560
OsAffx.18078.1.S1_at--404--4291Chr10:493824..493848 (25 bp)
CCTTCGCCGTTTAGGTTGCAACGCA
LOC_Os10g01780
Target Sequence 
GTCAAAAGCACTTCTGCTATCACGAAAAGAAAAATAGTTTACAATCTATGTTGCAAAGGTGGTCAAATACAATTACCTAA
GTTACGTCCTCCTCCTGAACCACTTGCAACATTATTAAACTTTAATGGTGATGCACGATCAAAAAGATTTTTGAGACAAA
TACGATTATATAACTCAATGTTTGTTTTCACTTCAATGGGTGCTACTGTTGACAAATCGATTAATACTGGGAATGCACCT
TATGTTTTCAAGATCAATGGAGTTGTGCACCACCGAATTGGTACTCTTGTGCGATCTCGTGGTTCACCTCCGAAATTCGC
TCAATTATACATCTATGATTCAGAAAATGAAATACAAAACAGGCTAAATATATTTGAAAATGATGGTGATAATGTAGATA
AAGCAGATTCTGAAATACTTGCTGCCCTGTCATTGATGTTTGATGCTGAGAATGCCCTTGTCCAAAACTTCAGATATGCT
AAAGAACGTCTTTCTGAACATGGTGATCAGCAAATAACCCTTCGCCGTTTAGGTTGCAACGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18078.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis