Browse Element(s) Details


OsAffx.6549.1.S1_at

Description tigr:9638.m00085
TID=OsAffx.6549.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0181011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g01770OsAffx.940.1.S1_x_at1/1110+484511..491354transposon protein, putative, unclassified
LOC_Os10g01780OsAffx.18078.1.S1_at11/1110+493773..494781AT hook motif-containing protein, putative
LOC_Os10g01790OsAffx.8572.1.S1_s_at11/1110+505357..508904transposon protein, putative, Mutator sub-class
LOC_Os10g01790OsAffx.8572.1.S1_at11/1110+505357..508904transposon protein, putative, Mutator sub-class
LOC_Os10g01800OsAffx.30234.1.S1_at11/1110+510294..511478Transferase family protein
LOC_Os10g01810OsAffx.6549.1.S1_at11/1110+512470..512873hypothetical protein
LOC_Os10g01820Os.54284.1.A1_at11/1110+513590..517749expressed protein
LOC_Os10g01820Os.14574.1.S1_at1/1110+513590..517749expressed protein
LOC_Os10g01830OsAffx.8570.1.S1_at10/1110+520105..522173hypothetical protein
LOC_Os10g01840OsAffx.18079.1.S1_at11/1110+525039..526779hypothetical protein
LOC_Os10g01850Os.19099.1.S1_x_at11/1110+535554..542282retrotransposon, putative, centromere-specific
LOC_Os10g01850OsAffx.30486.1.S1_at1/1110+535554..542282retrotransposon, putative, centromere-specific
LOC_Os10g01850Os.49373.1.S1_at1/1110+535554..542282retrotransposon, putative, centromere-specific

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6549.1.S1_at--6--7771Chr10:512506..512530 (25 bp)
GGTGAGCTGGCCTTGGAACCGCCAT
LOC_Os10g01810
OsAffx.6549.1.S1_at--661--8911Chr10:512508..512532 (25 bp)
TGAGCTGGCCTTGGAACCGCCATAT
LOC_Os10g01810
OsAffx.6549.1.S1_at--538--4711Chr10:512511..512535 (25 bp)
GCTGGCCTTGGAACCGCCATATCAT
LOC_Os10g01810
OsAffx.6549.1.S1_at--1100--3591Chr10:512517..512541 (25 bp)
CTTGGAACCGCCATATCATGCGACA
LOC_Os10g01810
OsAffx.6549.1.S1_at--946--8171Chr10:512520..512544 (25 bp)
GGAACCGCCATATCATGCGACAATG
LOC_Os10g01810
OsAffx.6549.1.S1_at--1060--2611Chr10:512522..512546 (25 bp)
AACCGCCATATCATGCGACAATGGG
LOC_Os10g01810
OsAffx.6549.1.S1_at--917--3571Chr10:512528..512552 (25 bp)
CATATCATGCGACAATGGGCGGCAG
LOC_Os10g01810
OsAffx.6549.1.S1_at--504--10171Chr10:512530..512554 (25 bp)
TATCATGCGACAATGGGCGGCAGTG
LOC_Os10g01810
OsAffx.6549.1.S1_at--71--5031Chr10:512549..512573 (25 bp)
GCAGTGGCGAGCCTCGGCTGACGAA
LOC_Os10g01810
OsAffx.6549.1.S1_at--578--5871Chr10:512557..512581 (25 bp)
GAGCCTCGGCTGACGAAGGGCGTGG
LOC_Os10g01810
OsAffx.6549.1.S1_at--506--8451Chr10:512567..512591 (25 bp)
TGACGAAGGGCGTGGGCGTCGGCAT
LOC_Os10g01810
Target Sequence 
GGTGAGCTGGCCTTGGAACCGCCATATCATGCGACAATGGGCGGCAGTGGCGAGCCTCGGCTGACGAAGGGCGTGGGCGT
CGGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6549.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis