Browse Element(s) Details


Os.54284.1.A1_at

Description gb:AK103056.1
DB_XREF= gi:32988265
TID=Os.54284.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54284 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033117K01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033117K01, full insert sequence.
FL= gb:AK103056.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0182011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g01770OsAffx.940.1.S1_x_at1/1110+484511..491354transposon protein, putative, unclassified
LOC_Os10g01780OsAffx.18078.1.S1_at11/1110+493773..494781AT hook motif-containing protein, putative
LOC_Os10g01790OsAffx.8572.1.S1_s_at11/1110+505357..508904transposon protein, putative, Mutator sub-class
LOC_Os10g01790OsAffx.8572.1.S1_at11/1110+505357..508904transposon protein, putative, Mutator sub-class
LOC_Os10g01800OsAffx.30234.1.S1_at11/1110+510294..511478Transferase family protein
LOC_Os10g01810OsAffx.6549.1.S1_at11/1110+512470..512873hypothetical protein
LOC_Os10g01820Os.54284.1.A1_at11/1110+513590..517749expressed protein
LOC_Os10g01820Os.14574.1.S1_at1/1110+513590..517749expressed protein
LOC_Os10g01830OsAffx.8570.1.S1_at10/1110+520105..522173hypothetical protein
LOC_Os10g01840OsAffx.18079.1.S1_at11/1110+525039..526779hypothetical protein
LOC_Os10g01850Os.19099.1.S1_x_at11/1110+535554..542282retrotransposon, putative, centromere-specific
LOC_Os10g01850OsAffx.30486.1.S1_at1/1110+535554..542282retrotransposon, putative, centromere-specific
LOC_Os10g01850Os.49373.1.S1_at1/1110+535554..542282retrotransposon, putative, centromere-specific

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54284.1.A1_at--1025--10852Chr10:517224..517248 (25 bp)
TTGGTTTTCTCCTTTAGCCTATACA
LOC_Os10g01820
Os.54284.1.A1_at--388--6571Chr10:517371..517395 (25 bp)
GATTCAGGCGATTGATTCAGGCGGC
LOC_Os10g01820
Os.54284.1.A1_at--670--5071Chr10:517396..517420 (25 bp)
GCAGCGTAGTGTGCTTCTATTGCTA
LOC_Os10g01820
Os.54284.1.A1_at--247--6191Chr10:517442..517466 (25 bp)
GAGGAAGACCCTAGAACTGTCCCCT
LOC_Os10g01820
Os.54284.1.A1_at--583--4191Chr10:517463..517487 (25 bp)
CCCTCTATGTGTAACGGCTGCTAAT
LOC_Os10g01820
Os.54284.1.A1_at--1075--8891Chr10:517504..517528 (25 bp)
TGAGTTTTATCCTTAAGGGTCTCCG
LOC_Os10g01820
Os.54284.1.A1_at--599--7171Chr10:517522..517546 (25 bp)
GTCTCCGGCCGTTACAGATGATTGG
LOC_Os10g01820
Os.54284.1.A1_at--1147--2631Chr10:517557..517581 (25 bp)
AACCAATTGTTTGTAATGCCTGCTG
LOC_Os10g01820
Os.54284.1.A1_at--355--3031Chr10:517571..517595 (25 bp)
AATGCCTGCTGAGCCGTTACAGATA
LOC_Os10g01820
Os.54284.1.A1_at--392--5831Chr10:517657..517681 (25 bp)
GACCGTCAAGTGCACATATTCTACA
LOC_Os10g01820
Os.54284.1.A1_at--1139--7951Chr10:517725..517749 (25 bp)
GGATCATGCTATTACAACTTCTTCG
LOC_Os10g01820
Target Sequence 
TTGGTTTTCTCCTTTAGCCTATACACTATATTTTTGTATGTGCAATTTTTTTATAAGGGTAGTTTATGGGATATAGACGA
AAAATAAACCAATGCTATGGGTGAATAGTATATGCATATTATTCCTCGAACATATTGGACTTCAATTGATTCAGGCGATT
GATTCAGGCGGCGCAGCGTAGTGTGCTTCTATTGCTAGTGAGTTTTATCTTTAACCAAGAGGAAGACCCTAGAACTGTCC
CCTCTATGTGTAACGGCTGCTAATTTTAAGCTGTTATAGATGAGTTTTATCCTTAAGGGTCTCCGGCCGTTACAGATGAT
TGGACACATGTGTAACCAATTGTTTGTAATGCCTGCTGAGCCGTTACAGATAGATAGGTCTGTGCTATATGTTTCTTAAT
TTTTGGATGTTGAAAAATAATTTTAAATGTCTTGACCGTCAAGTGCACATATTCTACATTTTGTAATATATAAGCCACAT
TTGTACAAACTACGGTTAATTGGATCATGCTATTACAACTTCTTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54284.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis