Browse Element(s) Details


OsAffx.18080.1.S1_at

Description tigr:9638.m00090
TID=OsAffx.18080.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0187011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g01830OsAffx.8570.1.S1_at10/1110+520105..522173hypothetical protein
LOC_Os10g01840OsAffx.18079.1.S1_at11/1110+525039..526779hypothetical protein
LOC_Os10g01850Os.19099.1.S1_x_at11/1110+535554..542282retrotransposon, putative, centromere-specific
LOC_Os10g01850OsAffx.30486.1.S1_at1/1110+535554..542282retrotransposon, putative, centromere-specific
LOC_Os10g01850Os.49373.1.S1_at1/1110+535554..542282retrotransposon, putative, centromere-specific
LOC_Os10g01860OsAffx.20812.1.S1_at11/1110+544493..545748retrotransposon protein, putative, LINE subclass
LOC_Os10g01870OsAffx.18080.1.S1_at11/1110+546822..548871hypothetical protein
LOC_Os10g01880NANA10+551558..553967hypothetical protein
LOC_Os10g01890OsAffx.435.1.S1_at11/1110+554759..558166retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g01890OsAffx.19377.1.S1_at1/1110+554759..558166retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g01900OsAffx.20810.1.S1_at11/1110+558728..559919retrotransposon protein, putative, LINE subclass
LOC_Os10g01910OsAffx.20809.1.S1_at11/1110+560328..565291retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g01920Os.46590.1.S1_at11/1110+567171..568806Transferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18080.1.S1_at--687--791Chr10:548285..548309 (25 bp)
ATGGATTCAGGAACCGACTTCGGGC
LOC_Os10g01870
OsAffx.18080.1.S1_at--104--3211Chr10:548310..548334 (25 bp)
CAAGGATGACGTGTTAGGCCGCAAG
LOC_Os10g01870
OsAffx.18080.1.S1_at--265--7691Chr10:548334..548358 (25 bp)
GGGTTTGCAGATAGAGGCCCTCGCT
LOC_Os10g01870
OsAffx.18080.1.S1_at--209--10771Chr10:548438..548462 (25 bp)
TTGATCGCCTTAGGGCCGATGTGGA
LOC_Os10g01870
OsAffx.18080.1.S1_at--723--1151Chr10:548474..548498 (25 bp)
AGTCTAGAACTGAGGTCGACCGCCT
LOC_Os10g01870
OsAffx.18080.1.S1_at--253--5571Chr10:548518..548542 (25 bp)
GAAAGAGCCCATTCCGTGGCGCTGA
LOC_Os10g01870
OsAffx.18080.1.S1_at--436--3991Chr10:548532..548556 (25 bp)
CGTGGCGCTGACTGACTATTACAAT
LOC_Os10g01870
OsAffx.18080.1.S1_at--663--8951Chr10:548544..548568 (25 bp)
TGACTATTACAATCTCACCGAGCTG
LOC_Os10g01870
OsAffx.18080.1.S1_at--347--2371Chr10:548653..548677 (25 bp)
AAAGCCACCGCTTCTGCGAAGACGG
LOC_Os10g01870
OsAffx.18080.1.S1_at--1032--2451Chr10:548777..548801 (25 bp)
AACAAGCCGGTGGTGCGATCTCGGA
LOC_Os10g01870
OsAffx.18080.1.S1_at--660--7291Chr10:548789..548813 (25 bp)
GTGCGATCTCGGATTGTGCCACCGC
LOC_Os10g01870
Target Sequence 
ATGGATTCAGGAACCGACTTCGGGCCAAGGATGACGTGTTAGGCCGCAAGGGTTTGCAGATAGAGGCCCTCGCTAACACC
TTCAAGGAGGCGAAAGCCGAAAACAAGCGACTCCAGGCAGAACTGGAGAAGGGAAGAGAGGCCAGAGCTGAGGTTGATCG
CCTTAGGGCCGATGTGGATAAAGGAAGAGAGTCTAGAACTGAGGTCGACCGCCTCAGAGTCGAACTTGAAAAGGAAAGAG
CCCATTCCGTGGCGCTGACTGACTATTACAATCTCACCGAGCTGAAGATGGAGGCTCTTCGCCTGGAGGTCAGTAAAGCT
GAGGCGAGAGCTGCGGAGGAGTCGCAGCGGTTTTCGCGGGAGATGGCGAAAGCCACCGCTTCTGCGAAGACGGCGCGCCA
AACACTTCGCCTTGCCCTCTCCGACATGGGGGCGTGGGTTCGAGGAGTTCCTGGCGAGGACGCCTCCGTCTTCGACTTCT
CGGAGTGGACCCAACAAGCCGGTGGTGCGATCTCGGATTGTGCCACCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18080.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis