Browse Element(s) Details


OsAffx.18096.1.S1_at

Description tigr:9638.m00186
TID=OsAffx.18096.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0280011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g02770Os.10574.1.S1_at10/1110+1076943..1081099Glycosyl hydrolases family 16 protein, expressed
LOC_Os10g02780OsAffx.18095.1.S1_x_at11/1110+1092946..1094113hypothetical protein
LOC_Os10g02790OsAffx.425.1.S1_at11/1110+1099004..1100764transposon protein, putative, Mariner sub-class
LOC_Os10g02800OsAffx.18096.1.S1_at11/1110+1101004..1101811hypothetical protein
LOC_Os10g02814Os.46737.3.S1_x_at11/1110+1110875..1115631G-protein alpha subunit, putative, expressed
LOC_Os10g02814Os.46737.1.S1_at11/1110+1110875..1115631G-protein alpha subunit, putative, expressed
LOC_Os10g02830OsAffx.30247.1.S1_x_at11/1110+1120860..1121120hypothetical protein
LOC_Os10g02830OsAffx.30247.1.S1_at11/1110+1120860..1121120hypothetical protein
LOC_Os10g02840Os.46511.2.S1_x_at11/1110+1124076..1125580O-methyltransferase family protein, expressed
LOC_Os10g02840Os.46511.1.S1_at10/1110+1124076..1125580O-methyltransferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18096.1.S1_at--1105--451Chr10:1101205..1101229 (25 bp)
ATCTCTGCGTCTGGCAGTGCCAACT
LOC_Os10g02800
OsAffx.18096.1.S1_at--1103--1131Chr10:1101220..1101244 (25 bp)
AGTGCCAACTCCGACGAGGCGAAGT
LOC_Os10g02800
OsAffx.18096.1.S1_at--438--6091Chr10:1101265..1101289 (25 bp)
GAGTCCGGCAACACCTCCGACAAGA
LOC_Os10g02800
OsAffx.18096.1.S1_at--483--4851Chr10:1101295..1101319 (25 bp)
GCTACCTCCATCTTCGAGTCTGGCA
LOC_Os10g02800
OsAffx.18096.1.S1_at--731--1152Chr10:1101311..1101335 (25 bp)
AGTCTGGCACCACCTCCATGGCTTT
LOC_Os10g02800
OsAffx.18096.1.S1_at--1128--4331Chr10:1101326..1101426 (25 bp)
CCATGGCTTTGCGAGCAAACGAGGT
LOC_Os10g02800
OsAffx.18096.1.S1_at--692--594Chr10:10422518..10422542 (25 bp)
ATGCCTGCATGCGACGCTTAAGGAA
NONE
OsAffx.18096.1.S1_at--164--134Chr10:10422573..10422597 (25 bp)
ATTAATTGCGGGAGCGGCTATCGAA
NONE
OsAffx.18096.1.S1_at--82--10011Chr10:1101735..1101759 (25 bp)
TAGACGAGGGTAATTCCGTCCACAT
LOC_Os10g02800
OsAffx.18096.1.S1_at--13--1053Chr10:10422604..10422628 (25 bp)
AGGGTAATTCCGTCCACATAGCCTG
NONE
OsAffx.18096.1.S1_at--56--2092Chr10:10422619..10422643 (25 bp)
ACATAGCCTGCTGCGGTTCAGAACG
NONE
Target Sequence 
ATCTCTGCGTCTGGCAGTGCCAACTCCGACGAGGCGAAGTCCGGTGGAAGCAACATCTCCGAGTCCGGCAACACCTCCGA
CAAGACCAGCGCTACCTCCATCTTCGAGTCTGGCACCACCTCCATGGCTTTGCGAGCAAACGAGGTGAGCGGGCGCAACG
AGCGGCGCGACGGCGGCGGCGACCGCGACGAGAGCGGGGCCGGCGAGCACGATGCAAGCGGCGGTGGTGGCGAGTGCGAC
GAGAGCAGCGGCGGCGAGCGTGACGAGAGTGCGGCCGGCGAGCGCGACGCAAGTGGCAGCGGCGGCGAGAGCGACGAGAG
CAGGGCCGGCGAGCTTGACGCAAGCGGCGGCGGCGAGGTTGAGCGGCGTGCTGCATGCCTGCATGCGACGCTTAAGGAAT
TAAATGAGGCGAGCGCGGGCGTGCTGCGGATTAATTGCGGGAGCGGCTATCGAATAGACGAGGGTAATTCCGTCCACATA
GCCTGCTGCGGTTCAGAACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18096.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis