Browse Element(s) Details


OsAffx.18105.3.S1_at

Description tigr:9634.m02917
TID=OsAffx.18105.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3033011/11immediate-early fungal elicitor protein CMPG1, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g30310Os.18215.1.S1_at11/116+17487835..17500187Alpha-glucan water dikinase, chloroplast precursor, putative, expressed
LOC_Os06g30310OsAffx.10482.1.S1_x_at1/116+17487835..17500187Alpha-glucan water dikinase, chloroplast precursor, putative, expressed
LOC_Os06g30320Os.21423.1.S1_at11/116+17504130..17510949Nucleolar complex-associated protein, expressed
LOC_Os06g30330OsAffx.18105.3.S1_at11/116+17518054..17518602immediate-early fungal elicitor protein CMPG1, putative
LOC_Os06g30340NANA6+17522117..17523148retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g30350Os.47130.4.A1_x_at1/116+17533154..17533486retrotransposon protein, putative, unclassified
LOC_Os06g30350Os.37083.2.S1_at1/116+17533154..17533486retrotransposon protein, putative, unclassified
LOC_Os06g30370Os.16218.1.S1_at11/116+17538926..17541483MOTHER of FT and TF1 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18105.3.S1_at--449--3311Chr06:17518199..17518223 (25 bp)
CACAGGCGGGCGAGGTGTTGAGCTT
LOC_Os06g30330
OsAffx.18105.3.S1_at--360--1051Chr06:17518211..17518235 (25 bp)
AGGTGTTGAGCTTGGGCGAGGTCGA
LOC_Os06g30330
OsAffx.18105.3.S1_at--513--4551Chr06:17518300..17518324 (25 bp)
GCGCGGGAGTCCGATAGGGACCGGT
LOC_Os06g30330
OsAffx.18105.3.S1_at--827--1131Chr06:17518307..17518331 (25 bp)
AGTCCGATAGGGACCGGTGGTGCCT
LOC_Os06g30330
OsAffx.18105.3.S1_at--1008--1771Chr06:17518319..17518343 (25 bp)
ACCGGTGGTGCCTCGCGTCATCTGG
LOC_Os06g30330
OsAffx.18105.3.S1_at--1151--4671Chr06:17518366..17518390 (25 bp)
GCGGTCGCATCGTTCGCCGCAGTGA
LOC_Os06g30330
OsAffx.18105.3.S1_at--860--511Chr06:17518374..17518398 (25 bp)
ATCGTTCGCCGCAGTGAGTGACTCG
LOC_Os06g30330
OsAffx.18105.3.S1_at--8--6711Chr06:17518377..17518401 (25 bp)
GTTCGCCGCAGTGAGTGACTCGTCA
LOC_Os06g30330
OsAffx.18105.3.S1_at--1132--4511Chr06:17518381..17518405 (25 bp)
GCCGCAGTGAGTGACTCGTCAGCGT
LOC_Os06g30330
OsAffx.18105.3.S1_at--194--5031Chr06:17518384..17518408 (25 bp)
GCAGTGAGTGACTCGTCAGCGTCGT
LOC_Os06g30330
OsAffx.18105.3.S1_at--550--9091Chr06:17518415..17518439 (25 bp)
TGCTCAACGACGTCCAGGCGTCGCT
LOC_Os06g30330
Target Sequence 
CACAGGCGGGCGAGGTGTTGAGCTTGGGCGAGGTCGAGGCCGCCGCGCGGGCGGGCGACGCGGCGAGGTGCGGCGCGGCG
GTGCGCGAGGTCGGCCGCCTCGCGCGGGAGTCCGATAGGGACCGGTGGTGCCTCGCGTCATCTGGCGCCGCCAGCGCACT
CGCCGCGGCGGTCGCATCGTTCGCCGCAGTGAGTGACTCGTCAGCGTCGTCGGTCCTGCTCAACGACGTCCAGGCGTCGC
T

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18105.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis