Browse Element(s) Details


OsAffx.18112.1.S1_at

Description tigr:9638.m00275
TID=OsAffx.18112.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0368010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g03660Os.23283.1.S1_at10/1110+1606380..1620106F-box domain containing protein, expressed
LOC_Os10g03660Os.8362.2.S1_x_at1/1110+1606380..1620106F-box domain containing protein, expressed
LOC_Os10g03660Os.27021.1.S1_at1/1110+1606380..1620106F-box domain containing protein, expressed
LOC_Os10g03660Os.27021.1.S1_x_at1/1110+1606380..1620106F-box domain containing protein, expressed
LOC_Os10g03670Os.46556.2.A1_at11/1110+1626713..1630918NB-ARC domain containing protein, expressed
LOC_Os10g03680OsAffx.18112.1.S1_at10/1110+1631136..1634213hypothetical protein
LOC_Os10g03690Os.8362.2.S1_x_at10/1110+1640759..1643397F-box domain containing protein, expressed
LOC_Os10g03690Os.8362.1.S1_at9/1110+1640759..1643397F-box domain containing protein, expressed
LOC_Os10g03700OsAffx.19421.1.S1_at2/1110+1644919..1655502transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g03700Os.46058.2.S1_x_at1/1110+1644919..1655502transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g03710OsAffx.30261.2.S1_s_at11/1110+1656435..1659338hypothetical protein
LOC_Os10g03710OsAffx.30261.1.S1_at8/1110+1656435..1659338hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18112.1.S1_at--295--9391Chr10:1634150..1634174 (25 bp)
TCGAGGCGCGTTGGGTCCACGCTCA
LOC_Os10g03680
OsAffx.18112.1.S1_at--838--771Chr10:1634093..1634117 (25 bp)
ATGTCCTTCTTGGACTCGCGACAGG
LOC_Os10g03680
OsAffx.18112.1.S1_at--440--4251Chr10:1634068..1634092 (25 bp)
CCGTGCAGATGTGTGTGCTGTTGCA
LOC_Os10g03680
OsAffx.18112.1.S1_at--285--4471Chr10:1634016..1634040 (25 bp)
GCCTCGCATCAACATCGACTGCAAA
LOC_Os10g03680
OsAffx.18112.1.S1_at--597--2331Chr10:1633994..1634018 (25 bp)
AAAGAGTCCTCGCATCAACATCGAC
LOC_Os10g03680
OsAffx.18112.1.S1_at--505--3291NONE
CAAAGAGTTCGAGCCTTGCAGGCCC
NONE
OsAffx.18112.1.S1_at--8--1471Chr10:1632356..1632767 (25 bp)
AGAAGTTCTACACTTATGCTCCCAG
LOC_Os10g03680
OsAffx.18112.1.S1_at--842--4171Chr10:1632336..1632360 (25 bp)
CCCAGGCTTGGGACGCTAATAATAG
LOC_Os10g03680
OsAffx.18112.1.S1_at--1056--7931Chr10:1631491..1631515 (25 bp)
GGATAACTAACATTCCCTCGTCTTA
LOC_Os10g03680
OsAffx.18112.1.S1_at--257--3791Chr10:1631475..1631499 (25 bp)
CTCGTCTTATTTCGGTCGTGCACTG
LOC_Os10g03680
OsAffx.18112.1.S1_at--56--9431Chr10:1631460..1631484 (25 bp)
TCGTGCACTGTTGCTTCATGATAGT
LOC_Os10g03680
Target Sequence 
TCGAGGCGCGTTGGGTCCACGCTCAGCGACCTCCCCGAAGGAGTCCTCCACCACATCATGTCCTTCTTGGACTCGCGACA
GGCCGTGCAGATGTGTGTGCTGTTGCAGCGGTGGCGCAACCTCTGGCGCTCCATGCCTCGCATCAACATCGACTGCAAAG
AGTCCTCGCATCAACATCGACTGCAAAGAGTTCGAGCCTTGCAGGCCCCTCCAGAAGTTCTACACTTATGCTCCCAGGCT
TGGGACGCTAATAATAGGAAGTTTTGCCATATAATTGGGATAACTAACATTCCCTCGTCTTATTTCGGTCGTGCACTGTT
GCTTCATGATAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18112.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis