Browse Element(s) Details


OsAffx.18122.1.S1_x_at

Description tigr:9638.m00339
TID=OsAffx.18122.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g637502/11hypothetical protein
LOC_Os05g011501/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g159901/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g093101/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g081501/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g042901/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g299201/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g340201/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g388901/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os06g330501/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g337601/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g276001/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g63710Os.27265.1.S1_s_at11/111+37278922..37283576cell division control protein CDC6b, putative, expressed
LOC_Os01g63720OsAffx.11714.1.S1_at11/111+37287609..37288015hypothetical protein
LOC_Os01g63730OsAffx.2396.1.S1_at11/111+37291178..37291577hypothetical protein
LOC_Os01g63740OsAffx.25936.1.S1_s_at6/111+37302994..37306723transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g63740OsAffx.25936.7.S1_s_at5/111+37302994..37306723transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g63740OsAffx.25936.1.S1_at3/111+37302994..37306723transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g63740OsAffx.25936.5.S1_x_at2/111+37302994..37306723transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g63740OsAffx.25936.2.S1_x_at1/111+37302994..37306723transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g63750OsAffx.18122.1.S1_x_at2/111+37307938..37308616hypothetical protein
LOC_Os01g63760Os.10827.1.S1_x_at9/111+37308980..37312768transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g63760Os.46055.2.S1_x_at4/111+37308980..37312768transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g63770Os.6258.1.S1_a_at11/111+37325187..37331492AUX1-like permease, putative, expressed
LOC_Os01g63770OsAffx.7026.1.S1_x_at2/111+37325187..37331492AUX1-like permease, putative, expressed
LOC_Os01g63780OsAffx.11715.1.S1_at10/111+37332994..37338205Nsp1-like C-terminal region family protein, expressed
LOC_Os01g63780Os.25247.1.A1_at2/111+37332994..37338205Nsp1-like C-terminal region family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18122.1.S1_x_at--705--3971Chr10:2016987..2017123 (25 bp)
CGGTCGAGAGAGTGACATCACCTAT
NONE
OsAffx.18122.1.S1_x_at--70--7811Chr10:2016986..2017122 (25 bp)
GGTCGAGAGAGTGACATCACCTATG
NONE
OsAffx.18122.1.S1_x_at--552--8953Chr04:4324883..4324902 (20 bp)
TGACATCACCTATGACGGGCGCCAA
NONE
OsAffx.18122.1.S1_x_at--595--5673Chr04:4324883..4324903 (21 bp)
GACATCACCTATGACGGGCGCCAAT
NONE
OsAffx.18122.1.S1_x_at--640--2092Chr04:4324883..4324903 (21 bp)
ACATCACCTATGACGGGCGCCAATT
NONE
OsAffx.18122.1.S1_x_at--923--4291Chr10:2016967..2016991 (25 bp)
CCTATGACGGGCGCCAATTGTGGAG
NONE
OsAffx.18122.1.S1_x_at--660--3691Chr10:2016966..2016990 (25 bp)
CTATGACGGGCGCCAATTGTGGAGC
NONE
OsAffx.18122.1.S1_x_at--552--4551Chr10:2016957..2016981 (25 bp)
GCGCCAATTGTGGAGCCGTCACAGG
NONE
OsAffx.18122.1.S1_x_at--19--4392Chr10:2016955..2016979 (25 bp)
GCCAATTGTGGAGCCGTCACAGGTG
NONE
OsAffx.18122.1.S1_x_at--148--80956Chr12:6057990..6058015 (25 bp)
GGAGCCGTCACAGGTGAGGCCACCT
NONE
OsAffx.18122.1.S1_x_at--894--16771Chr12:6063839..6063861 (23 bp)
AGCCGTCACAGGTGAGGCCACCTGT
NONE
Target Sequence 
CGGTCGAGAGAGTGACATCACCTATGACGGGCGCCAATTGTGGAGCCGTCACAGGTGAGGCCACCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18122.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis