Browse Element(s) Details


OsAffx.18126.1.S1_at

Description gb:NM_194751.1
DB_XREF= gi:37530861
TID=OsAffx.18126.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0013J21.10), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0445011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g04390OsAffx.30276.1.S1_at11/1110+2057176..2060535hypothetical protein
LOC_Os10g04400OsAffx.18124.1.S1_at11/1110+2062030..2065228Transferase family protein
LOC_Os10g04400OsAffx.18124.1.S1_x_at11/1110+2062030..2065228Transferase family protein
LOC_Os10g04410OsAffx.18125.1.S1_at10/1110+2069274..2070969hypothetical protein
LOC_Os10g04429Os.46537.1.S1_at11/1110+2071575..2076080Transferase family protein, expressed
LOC_Os10g04429OsAffx.18124.1.S1_x_at3/1110+2071575..2076080Transferase family protein, expressed
LOC_Os10g04450OsAffx.18126.1.S1_at11/1110+2082437..2083870hypothetical protein
LOC_Os10g04460OsAffx.30277.1.S1_at10/1110+2085312..2085780hypothetical protein
LOC_Os10g04470OsAffx.20764.1.S1_at11/1110+2091904..2093334hypothetical protein
LOC_Os10g04480OsAffx.30278.1.S1_at11/1110+2106745..2107886hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18126.1.S1_at--1123--1311Chr10:2082953..2082977 (25 bp)
AGAGGAATATAGCTACCTTTTCAAG
LOC_Os10g04450
OsAffx.18126.1.S1_at--162--4291Chr10:2082892..2082916 (25 bp)
CCTAAGATGGCCATGGTTGCAAATG
LOC_Os10g04450
OsAffx.18126.1.S1_at--262--10731Chr10:2082864..2082888 (25 bp)
TTGCAGTTGTCTTGGGTGGATCACT
LOC_Os10g04450
OsAffx.18126.1.S1_at--723--7511Chr10:2082849..2082873 (25 bp)
GTGGATCACTGATAACTGCAAACGT
LOC_Os10g04450
OsAffx.18126.1.S1_at--271--9011Chr10:2082833..2082857 (25 bp)
TGCAAACGTGGTTGCTGACTTGCTT
LOC_Os10g04450
OsAffx.18126.1.S1_at--426--8171Chr10:2082783..2082807 (25 bp)
GGAACAGCGTATTGCAGCGCTTCAA
LOC_Os10g04450
OsAffx.18126.1.S1_at--104--6531Chr10:2082675..2082699 (25 bp)
GATTTGGATCATCTTATCGTACTCG
LOC_Os10g04450
OsAffx.18126.1.S1_at--672--10151Chr10:2082661..2082685 (25 bp)
TATCGTACTCGTCTTCATCTGATGC
LOC_Os10g04450
OsAffx.18126.1.S1_at--25--5851Chr10:2082577..2082601 (25 bp)
GACCTAATAGCTGGATGTGCTGCAA
LOC_Os10g04450
OsAffx.18126.1.S1_at--901--5231Chr10:2082513..2082537 (25 bp)
GAATACCACCTCATACCATGTATGT
LOC_Os10g04450
OsAffx.18126.1.S1_at--1035--771Chr10:2082492..2082516 (25 bp)
ATGTGCAGTCTGTTGTAGCTTTCGT
LOC_Os10g04450
Target Sequence 
AGAGGAATATAGCTACCTTTTCAAGATGCTAGCATTTGGAAGCATAGATGAAAAGGACCATCCTAAGATGGCCATGGTTG
CAAATGATCTTGCAGTTGTCTTGGGTGGATCACTGATAACTGCAAACGTGGTTGCTGACTTGCTTAGAAGGAACCATGAT
TTTCAATTATGGAACAGCGTATTGCAGCGCTTCAAGGAGATGGTAAAAAGTAACTTGTCAAAATATGGTGAACATCCAAA
AGATATCATTGAGAAAGAGCATCCAATAGACATAACTAGATTTGGATCATCTTATCGTACTCGTCTTCATCTGATGCCAC
CTCGAGTAGAAAGGGATGATAGTCCAAACAGGAAAAAACCAAGTTTGTTATTTAGAGACCTAATAGCTGGATGTGCTGCA
ATTCCAGATGGCGATTTTGAATTAGTAACATGGGAATCACGAATACCACCTCATACCATGTATGTGCAGTCTGTTGTAGC
TTTCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18126.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis