Browse Element(s) Details


OsAffx.18139.2.S1_at

Description tigr:9630.m00564
TID=OsAffx.18139.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0635010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g06300Os.14283.1.A1_at11/112+3144057..3152625GTP-binding protein LepA containing protein, expressed
LOC_Os02g06310Os.45422.1.S1_x_at2/112+3154192..3157440hypothetical protein
LOC_Os02g06320OsAffx.24127.1.S1_at10/112+3158637..3160600RNA recognition motif 2 family protein
LOC_Os02g06330OsAffx.24128.1.S1_s_at11/112+3163942..3165032AP2 domain containing protein, expressed
LOC_Os02g06340Os.24778.1.S1_at11/112+3166615..3170814EH-domain containing protein 1, putative, expressed
LOC_Os02g06350OsAffx.18139.2.S1_at10/112+3171932..3174989hypothetical protein
LOC_Os02g06350Os.55379.1.S1_x_at1/112+3171932..3174989hypothetical protein
LOC_Os02g06360Os.7064.1.S1_s_at11/112+3179627..3182762KpsF/GutQ family protein, expressed
LOC_Os02g06370Os.32450.1.S1_at10/112+3182870..3187022DNA-binding protein, putative, expressed
LOC_Os02g06380OsAffx.24129.1.S1_at10/112+3188102..3190109uncharacterized plant-specific domain TIGR01627 family protein, expressed
LOC_Os02g06390Os.5009.1.S1_at10/112+3191320..3194131expressed protein
LOC_Os02g06400Os.49870.1.S1_at11/112+3197172..3203165Plant protein family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18139.2.S1_at--374--9331NONE
TCGCCTTGTCGCCAATTCTACGAAA
NONE
OsAffx.18139.2.S1_at--732--6531Chr02:3174121..3174145 (25 bp)
GATTTACCGTATTCAAGTTGTTTGC
LOC_Os02g06350
OsAffx.18139.2.S1_at--210--5571Chr02:3174174..3174198 (25 bp)
GAAAGAAGTCTACATGGTGCCATCA
LOC_Os02g06350
OsAffx.18139.2.S1_at--876--3211Chr02:3174218..3174242 (25 bp)
CAAGAACCCAACAGTTGTGCCTGGT
LOC_Os02g06350
OsAffx.18139.2.S1_at--936--7491Chr02:3174244..3174268 (25 bp)
GTGGTGCTATGGACGTATGCCAACT
LOC_Os02g06350
OsAffx.18139.2.S1_at--287--471Chr02:3174288..3174717 (25 bp)
ATCTGTCAAGATGTACGCCGCCGTG
LOC_Os02g06350
OsAffx.18139.2.S1_at--31--7511Chr02:3174715..3174739 (25 bp)
GTGGTGCCTCGCATGCAGCTACTAG
LOC_Os02g06350
OsAffx.18139.2.S1_at--948--631Chr02:3174727..3174751 (25 bp)
ATGCAGCTACTAGCACCACGGGAGC
LOC_Os02g06350
OsAffx.18139.2.S1_at--1102--3831Chr02:3174772..3174796 (25 bp)
CTGTTGGTCGCAAAGACGGCCAGGA
LOC_Os02g06350
OsAffx.18139.2.S1_at--936--8431Chr02:3174789..3174813 (25 bp)
GGCCAGGAACTCCTCGTCAAGCAGG
LOC_Os02g06350
OsAffx.18139.2.S1_at--1159--4611Chr02:3174813..3174837 (25 bp)
GCGAGGTCACAGTTGGCGTCATCTT
LOC_Os02g06350
Target Sequence 
TCGCCTTGTCGCCAATTCTACGAAACCGAGGATTTACCGTATTCAAGTTGTTTGCATTGTCATGCTATTTCATCGAGGAA
GCTGAAAGAAGTCTACATGGTGCCATCATTATTGTGAGTAGAGCTGTCAAGAACCCAACAGTTGTGCCTGGTGGTGGTGC
TATGGACGTATGCCAACTTGTCAAGATTAATGGTTCCATCTGTCAAGATGTACGCCGCCGTGGTGCCTCGCATGCAGCTA
CTAGCACCACGGGAGCCGCTGCCGCACGGGCCCCTGCTGTTGGTCGCAAAGACGGCCAGGAACTCCTCGTCAAGCAGGCG
AGGTCACAGTTGGCGTCATCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18139.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis