Browse Element(s) Details


OsAffx.18150.1.S1_at

Description tigr:9638.m00509
TID=OsAffx.18150.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0596011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g05900Os.51947.1.S1_at11/1110+2962570..2965653expressed protein
LOC_Os10g05900Os.49942.1.S1_at5/1110+2962570..2965653expressed protein
LOC_Os10g05910Os.46085.1.S1_x_at2/1110+2965911..2966719proline-rich protein, putative, expressed
LOC_Os10g05910Os.21524.2.S1_x_at1/1110+2965911..2966719proline-rich protein, putative, expressed
LOC_Os10g05930Os.46085.1.S1_x_at11/1110+2975065..2976037proline-rich protein, putative, expressed
LOC_Os10g05930Os.21524.2.S1_x_at3/1110+2975065..2976037proline-rich protein, putative, expressed
LOC_Os10g05940OsAffx.20746.1.S1_at11/1110+2979518..2980873expressed protein
LOC_Os10g05950Os.8638.1.S1_s_at11/1110+2983492..2985384proline-rich protein, putative, expressed
LOC_Os10g05950Os.8638.1.S1_at11/1110+2983492..2985384proline-rich protein, putative, expressed
LOC_Os10g05960OsAffx.18150.1.S1_at11/1110+2987757..2988335hypothetical protein
LOC_Os10g05970Os.37820.1.S1_x_at11/1110+2996967..2998098proline-rich protein, putative, expressed
LOC_Os10g05970Os.8385.1.S1_s_at11/1110+2996967..2998098proline-rich protein, putative, expressed
LOC_Os10g05970Os.8638.1.S1_s_at1/1110+2996967..2998098proline-rich protein, putative, expressed
LOC_Os10g05980Os.11398.1.S1_at11/1110+3001037..3002195proline-rich protein, putative, expressed
LOC_Os10g05990Os.10678.1.S1_at11/1110+3004849..3006285proline-rich protein, putative, expressed
LOC_Os10g05990Os.37820.1.S1_x_at1/1110+3004849..3006285proline-rich protein, putative, expressed
LOC_Os10g05990Os.8638.1.S1_s_at1/1110+3004849..3006285proline-rich protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18150.1.S1_at--988--3951Chr10:2988278..2988302 (25 bp)
CGGAGAATCGGCCACAGCAGCAACG
LOC_Os10g05960
OsAffx.18150.1.S1_at--488--7135Chr01:31128368..31128392 (25 bp)
GTCATCGTCGCAGAAATCAATTCGG
NONE
OsAffx.18150.1.S1_at--269--8151Chr10:2987923..2987947 (25 bp)
GGACACAAATTCACGTTCCAGATTG
LOC_Os10g05960
OsAffx.18150.1.S1_at--353--3351Chr10:2987912..2987936 (25 bp)
CACGTTCCAGATTGCTATATTCACA
LOC_Os10g05960
OsAffx.18150.1.S1_at--210--3675Chr01:31129055..31129079 (25 bp)
CTATATTCACAAGCCAGTCTACCAG
NONE
OsAffx.18150.1.S1_at--175--1151Chr10:2987883..2987907 (25 bp)
AGTCTACCAGGAGCTTCTGCACGGA
LOC_Os10g05960
OsAffx.18150.1.S1_at--14--9498Chr11:18508907..18508926 (20 bp)
TCTGCACGGAGATCAACTTCGTTTT
NONE
OsAffx.18150.1.S1_at--550--2511Chr10:2987854..2987878 (25 bp)
AACTTCGTTTTACGCACCCAGAGTG
LOC_Os10g05960
OsAffx.18150.1.S1_at--619--6791Chr10:2987848..2987872 (25 bp)
GTTTTACGCACCCAGAGTGTTTCGC
LOC_Os10g05960
OsAffx.18150.1.S1_at--27--5637Chr01:4649913..4649937 (25 bp)
GACAAATTGTACCAGCAGATTCAGG
NONE
OsAffx.18150.1.S1_at--1099--9611Chr10:2987787..2987811 (25 bp)
TCAGGATTTTATTTTTAAGGCGAGT
LOC_Os10g05960
Target Sequence 
CGGAGAATCGGCCACAGCAGCAACGCGTCGTCATCGTCGCAGAAATCAATTCGGGGGACACAAATTCACGTTCCAGATTG
CTATATTCACAAGCCAGTCTACCAGGAGCTTCTGCACGGAGATCAACTTCGTTTTACGCACCCAGAGTGTTTCGCGTTTC
TGCTAGGGTTTGACAAATTGTACCAGCAGATTCAGGATTTTATTTTTAAGGCGAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18150.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis