Browse Element(s) Details


OsAffx.18154.1.S1_at

Description tigr:9638.m00578
TID=OsAffx.18154.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0662011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g06610Os.51962.1.S1_at9/1110+3408248..3416654expressed protein
LOC_Os10g06610Os.23458.1.A1_x_at1/1110+3408248..3416654expressed protein
LOC_Os10g06620OsAffx.18154.1.S1_at11/1110+3418414..3418668hypothetical protein
LOC_Os10g06630Os.15856.1.S1_at11/1110+3422622..3423545Peptidyl-prolyl cis-trans isomerase, putative, expressed
LOC_Os10g06640NANA10+3430659..3435076transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g06650NANA10+3436782..3437165transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g06660Os.47463.1.S1_x_at4/1110+3438069..3441769transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g06660Os.14491.2.S1_x_at4/1110+3438069..3441769transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g06670OsAffx.18155.1.S1_x_at11/1110+3443307..3444545hypothetical protein
LOC_Os10g06670OsAffx.18155.1.S1_at11/1110+3443307..3444545hypothetical protein
LOC_Os10g06670OsAffx.28340.1.S1_x_at1/1110+3443307..3444545hypothetical protein
LOC_Os10g06670OsAffx.28340.3.S1_x_at1/1110+3443307..3444545hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18154.1.S1_at--991--4051Chr10:3418601..3418625 (25 bp)
CGATGGAGATGGGTACAGATAAAGT
LOC_Os10g06620
OsAffx.18154.1.S1_at--30--10451Chr10:3418557..3418581 (25 bp)
TTAGAGGTGGTGAGGACAATTGTCC
LOC_Os10g06620
OsAffx.18154.1.S1_at--488--951Chr10:3418545..3418569 (25 bp)
AGGACAATTGTCCAACTCCTCGAGG
LOC_Os10g06620
OsAffx.18154.1.S1_at--294--3171Chr10:3418540..3418564 (25 bp)
AATTGTCCAACTCCTCGAGGACAGG
LOC_Os10g06620
OsAffx.18154.1.S1_at--304--2551Chr10:3418532..3418556 (25 bp)
AACTCCTCGAGGACAGGCTGAAGAG
LOC_Os10g06620
OsAffx.18154.1.S1_at--952--3471Chr10:3418519..3418543 (25 bp)
CAGGCTGAAGAGGTTTCCAGAAATC
LOC_Os10g06620
OsAffx.18154.1.S1_at--707--5591Chr10:3418500..3418524 (25 bp)
GAAATCAAGATCAAATGGGTGCAAC
LOC_Os10g06620
OsAffx.18154.1.S1_at--484--2291Chr10:3418488..3418512 (25 bp)
AAATGGGTGCAACAATCAGCGAATA
LOC_Os10g06620
OsAffx.18154.1.S1_at--502--9231Chr10:3418473..3418497 (25 bp)
TCAGCGAATAAAGCTTACCCATTTA
LOC_Os10g06620
OsAffx.18154.1.S1_at--421--2351Chr10:3418464..3418488 (25 bp)
AAAGCTTACCCATTTAGTAGCAAAG
LOC_Os10g06620
OsAffx.18154.1.S1_at--344--3231Chr10:3418444..3418468 (25 bp)
CAAAGAAAGGACACTTAACAGGTGC
LOC_Os10g06620
Target Sequence 
CGATGGAGATGGGTACAGATAAAGTGATAATTGGAATAGATAGTTTAGAGGTGGTGAGGACAATTGTCCAACTCCTCGAG
GACAGGCTGAAGAGGTTTCCAGAAATCAAGATCAAATGGGTGCAACAATCAGCGAATAAAGCTTACCCATTTAGTAGCAA
AGAAAGGACACTTAACAGGTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18154.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis