Browse Element(s) Details


OsAffx.18204.2.A1_at

Description tigr:9630.m04735
TID=OsAffx.18204.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g485509/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g48510OsAffx.25095.3.S1_x_at1/112+29688880..29690097hypothetical protein
LOC_Os02g48510OsAffx.25095.5.S1_x_at1/112+29688880..29690097hypothetical protein
LOC_Os02g48520OsAffx.12552.1.S1_at11/112+29693627..29693902hypothetical protein
LOC_Os02g48530NANA2+29702623..29703243hypothetical protein
LOC_Os02g48540NANA2+29708013..29709564retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g48550OsAffx.18204.2.A1_at9/112+29712310..29713694hypothetical protein
LOC_Os02g48560Os.51593.1.S1_at11/112+29719246..29724483Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 2, putative, expressed
LOC_Os02g48560Os.10125.1.S1_a_at11/112+29719246..29724483Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 2, putative, expressed
LOC_Os02g48570OsAffx.24785.1.S1_at11/112+29730645..29733298POT family protein, expressed
LOC_Os02g48570OsAffx.24785.1.S1_x_at11/112+29730645..29733298POT family protein, expressed
LOC_Os02g48570OsAffx.27759.1.S1_x_at1/112+29730645..29733298POT family protein, expressed
LOC_Os02g48570Os.22699.1.S1_at1/112+29730645..29733298POT family protein, expressed
LOC_Os02g48580NANA2+29737433..29738541hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18204.2.A1_at--709--8331Chr02:29713605..29713629 (25 bp)
GGCGTTGTTGGGTGGGAGCTTCTCC
LOC_Os02g48550
OsAffx.18204.2.A1_at--548--10572Chr07:27335051..27335081 (25 bp)
TTCTCCTCCAGGCTACCAGGTATCA
NONE
OsAffx.18204.2.A1_at--32--43513Chr12:14942176..14942199 (24 bp)
CCAGGTATCAGGTACTAGGTATCAC
NONE
OsAffx.18204.2.A1_at--1128--6876Chr12:26156786..26156811 (25 bp)
GTATCAGGTACTAGGTATCACGGTA
NONE
OsAffx.18204.2.A1_at--164--7851Chr02:29713290..29713314 (25 bp)
GGTACTAGGTATCACGGTACTAGAT
LOC_Os02g48550
OsAffx.18204.2.A1_at--1070--7851Chr02:29713283..29713307 (25 bp)
GGTATCACGGTACTAGATAACATGT
LOC_Os02g48550
OsAffx.18204.2.A1_at--517--3711Chr02:29713271..29713295 (25 bp)
CTAGATAACATGTACCAGCCGGCAG
LOC_Os02g48550
OsAffx.18204.2.A1_at--495--1271Chr02:29713269..29713293 (25 bp)
AGATAACATGTACCAGCCGGCAGCC
LOC_Os02g48550
OsAffx.18204.2.A1_at--424--9811Chr02:29713266..29713290 (25 bp)
TAACATGTACCAGCCGGCAGCCGGT
LOC_Os02g48550
OsAffx.18204.2.A1_at--276--4491NONE
GCCGGCAGCCGGTACCAGATGTGAT
NONE
OsAffx.18204.2.A1_at--161--5071NONE
GCAGCCGGTACCAGATGTGATGAGT
NONE
Target Sequence 
GGCGTTGTTGGGTGGGAGCTTCTCCTGTCGGCTCAGGACCCTAGCCGCCGAGGAGGACGACGACGGCGCGGCCTCGGCAA
GGGTCGCCCTCAAGCTCCCCTCCCTTACCGCGCTGCTCTGGCTCCCCGCCCTCGTTGGTCTTCTCATAGGCTGCCCCACC
TCGACGACCATCGGATTCACAGCTGCCTCCTCCTCCACACTCCGCCTCGCCGACCACCGGATTCGCCACCGCCTCCTCGT
CCTGCTCCACCACGCGGCTGCCTTCTCCTTTCTCCCTCTCTCTCTCCTCCTTCTCCTCCAGGCTACCAGGTATCAGGTAC
TAGGTATCACGGTACTAGATAACATGTACCAGCCGGCAGCCGGTACCAGATGTGATGAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18204.2.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis