Browse Element(s) Details


OsAffx.18251.1.S1_at

Description tigr:9638.m01259
TID=OsAffx.18251.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1421011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g14160OsAffx.30414.1.S1_at11/1110+7446236..7446523hypothetical protein
LOC_Os10g14170Os.46707.1.A1_at11/1110+7450318..7451125hypothetical protein
LOC_Os10g14180Os.6177.1.S2_a_at11/1110+7457836..7461987expressed protein
LOC_Os10g14180Os.6177.3.S1_at10/1110+7457836..7461987expressed protein
LOC_Os10g14194Os.6177.2.S1_at10/1110+7461240..7467633expressed protein
LOC_Os10g14210OsAffx.18251.1.S1_at11/1110+7470513..7471111hypothetical protein
LOC_Os10g14210OsAffx.31134.1.S1_at1/1110+7470513..7471111hypothetical protein
LOC_Os10g14220OsAffx.8345.1.S1_at11/1110+7471987..7472284retrotransposon, putative, centromere-specific
LOC_Os10g14230Os.51987.1.S1_at2/1110+7477473..7479858hAT family dimerisation domain containing protein, expressed
LOC_Os10g14230Os.51987.1.S1_s_at1/1110+7477473..7479858hAT family dimerisation domain containing protein, expressed
LOC_Os10g14250NANA10+7490500..7491753retrotransposon protein, putative, unclassified
LOC_Os10g14260OsAffx.25936.1.S1_s_at11/1110+7495656..7499396transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g14260OsAffx.25936.7.S1_s_at11/1110+7495656..7499396transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g14260OsAffx.25936.1.S1_at7/1110+7495656..7499396transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g14260OsAffx.25936.2.S1_x_at4/1110+7495656..7499396transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g14260OsAffx.25936.5.S1_x_at2/1110+7495656..7499396transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18251.1.S1_at--44--10532Chr02:19394408..19394430 (23 bp)
TTCACTCTCCTCTTGCCATGTGTTC
NONE
OsAffx.18251.1.S1_at--9--3771Chr10:7471036..7471060 (25 bp)
CTCTTGCCATGTGTTCAGCTGATGA
LOC_Os10g14210
OsAffx.18251.1.S1_at--208--4431Chr10:7471031..7471055 (25 bp)
GCCATGTGTTCAGCTGATGACGAAT
LOC_Os10g14210
OsAffx.18251.1.S1_at--256--7431Chr10:7471026..7471050 (25 bp)
GTGTTCAGCTGATGACGAATATTCA
LOC_Os10g14210
OsAffx.18251.1.S1_at--861--5215Chr06:14447841..14448305 (25 bp)
GAATATTCAGGTATTGACGGCGTTA
NONE
OsAffx.18251.1.S1_at--767--10491Chr10:7470581..7470605 (25 bp)
TTAACCGCCGTCAACATCCATCAGG
LOC_Os10g14210
OsAffx.18251.1.S1_at--362--4011Chr10:7470573..7470597 (25 bp)
CGTCAACATCCATCAGGTTTTGGCA
LOC_Os10g14210
OsAffx.18251.1.S1_at--405--9631Chr10:7470561..7470585 (25 bp)
TCAGGTTTTGGCAGCCTCAGTTGAA
LOC_Os10g14210
OsAffx.18251.1.S1_at--41--6811Chr10:7470557..7470581 (25 bp)
GTTTTGGCAGCCTCAGTTGAAGGTA
LOC_Os10g14210
OsAffx.18251.1.S1_at--905--5071Chr10:7470551..7470575 (25 bp)
GCAGCCTCAGTTGAAGGTACTCATG
LOC_Os10g14210
OsAffx.18251.1.S1_at--603--1231Chr10:7470543..7470567 (25 bp)
AGTTGAAGGTACTCATGACATGCCT
LOC_Os10g14210
Target Sequence 
TTCACTCTCCTCTTGCCATGTGTTCAGCTGATGACGAATATTCAGGTATTGACGGCGTTAAATTGGTACTTAACCGCCGT
CAACATCCATCAGGTTTTGGCAGCCTCAGTTGAAGGTACTCATGACATGCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18251.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis