Browse Element(s) Details


OsAffx.18261.1.S1_s_at

Description gb:NM_195583.1
DB_XREF= gi:37532525
TID=OsAffx.18261.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0034E23.20), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1658011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g16540NANA10+7911039..7914125retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g16550NANA10+7916308..7921369retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g16560NANA10+7922720..7930781retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g16570NANA10+7934395..7935108retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g16580OsAffx.18261.1.S1_s_at11/1110+7936472..7937843hypothetical protein
LOC_Os10g16580OsAffx.202.1.S1_at1/1110+7936472..7937843hypothetical protein
LOC_Os10g16589NANA10+7938931..7939202NA
LOC_Os10g16600NANA10+7943406..7950073retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g16610OsAffx.20566.1.S1_at10/1110+7952847..7953843hypothetical protein
LOC_Os10g16620OsAffx.30430.2.S1_at11/1110+7955595..7956131hypothetical protein
LOC_Os10g16620OsAffx.30430.1.S1_s_at11/1110+7955595..7956131hypothetical protein
LOC_Os10g16630NANA10+7959963..7960580retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18261.1.S1_s_at--904--931Chr10:7936520..7936544 (25 bp)
AGGCAAGCAGGAATCACTGCTCGTA
LOC_Os10g16580
OsAffx.18261.1.S1_s_at--497--5011Chr10:7936526..7936550 (25 bp)
GCAGGAATCACTGCTCGTAATGCAG
LOC_Os10g16580
OsAffx.18261.1.S1_s_at--175--5251Chr10:7936530..7936554 (25 bp)
GAATCACTGCTCGTAATGCAGTAAA
LOC_Os10g16580
OsAffx.18261.1.S1_s_at--110--9091Chr10:7936537..7936561 (25 bp)
TGCTCGTAATGCAGTAAATGCGAAG
LOC_Os10g16580
OsAffx.18261.1.S1_s_at--234--3011Chr10:7936544..7936568 (25 bp)
AATGCAGTAAATGCGAAGGACCGTT
LOC_Os10g16580
OsAffx.18261.1.S1_s_at--91--3371Chr10:7937395..7937419 (25 bp)
CACCTTCTGCCGAGTGGTATGTGGG
LOC_Os10g16580
OsAffx.18261.1.S1_s_at--39--9491Chr10:7937400..7937424 (25 bp)
TCTGCCGAGTGGTATGTGGGCACCC
LOC_Os10g16580
OsAffx.18261.1.S1_s_at--1133--7211Chr10:7937483..7937507 (25 bp)
GTCCACTCCAAAGGACGACCGATTT
LOC_Os10g16580
OsAffx.18261.1.S1_s_at--406--2311Chr10:7937492..7937516 (25 bp)
AAAGGACGACCGATTTTGCATTCAG
LOC_Os10g16580
OsAffx.18261.1.S1_s_at--579--7591Chr10:7937587..7937611 (25 bp)
GGGCAGCAGGATCCCGTAGCTCTCC
LOC_Os10g16580
OsAffx.18261.1.S1_s_at--706--991Chr10:7937594..7937618 (25 bp)
AGGATCCCGTAGCTCTCCACCTATG
LOC_Os10g16580
Target Sequence 
AGGCAAGCAGGAATCACTGCTCGTAATGCAGTAAATGCGAAGGACCGTTCGATGTCATCGACACCTCTTCGCACGGGGCA
ATCACACTCCGCGACGATTCAGGCGCGACGCCTTTTTCAAAATGCTGAGAAGGTCGCTCCACCTTCTGCCGAGTGGTATG
TGGGCACCCTGTTCACCAAGGCAGGGGATGAGGTGCTCCACAAGTACACCACACCTACCGCCACTCCGTCCACTCCAAAG
GACGACCGATTTTGCATTCAGGGAGTGCAAACTCCCGGCGGTGGGTATGGTAAAGGCTTGCTCCGGCCTTTGACGGCATC
CGGGAAGGAGGGGGCAGCAGGATCCCGTAGCTCTCCACCTATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18261.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis