Browse Element(s) Details


OsAffx.18277.1.S1_at

Description gb:NM_195709.1
DB_XREF= gi:37532777
TID=OsAffx.18277.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative protein kinase (OSJNBa0093I09.15), mRNA.
PROD=putative protein kinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1791011/11Protein kinase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g17850OsAffx.22699.1.S1_x_at2/1110+8698669..8700249retrotransposon protein, putative, unclassified
LOC_Os10g17860Os.52731.1.S1_at1/1110+8700620..8701924retrotransposon protein, putative, unclassified
LOC_Os10g17870NANA10+8702326..8705512hypothetical protein
LOC_Os10g17880OsAffx.6686.1.S1_at9/1110+8707240..8709014hypothetical protein
LOC_Os10g17890OsAffx.30441.1.S1_at11/1110+8710622..8711533wall-associated kinase 3, putative
LOC_Os10g17900Os.9523.1.S1_at1/1110+8713170..8720349retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g17910OsAffx.18277.1.S1_at11/1110+8724773..8726138Protein kinase domain containing protein
LOC_Os10g17920OsAffx.20540.1.S1_at11/1110+8728705..8730287retrotransposon protein, putative, unclassified, expressed
LOC_Os10g17930Os.46855.1.S1_at11/1110+8731422..8733068F-box domain containing protein, expressed
LOC_Os10g17940Os.46566.2.S1_x_at11/1110+8747152..8748591F-box domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0005618cellular_componentcell wall
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18277.1.S1_at--758--10611Chr10:8725593..8725617 (25 bp)
TTCGGGACATCCAAGCTGCTTACCG
LOC_Os10g17910
OsAffx.18277.1.S1_at--1095--1571Chr10:8725606..8725630 (25 bp)
AGCTGCTTACCGTGGATAAAGACTT
LOC_Os10g17910
OsAffx.18277.1.S1_at--761--6771Chr10:8725657..8725681 (25 bp)
GTTACATAGACCCTGTGTTTCATAA
LOC_Os10g17910
OsAffx.18277.1.S1_at--140--6111Chr10:8725723..8725747 (25 bp)
GAGTCGTTCTATTAGAGCTCATCAC
LOC_Os10g17910
OsAffx.18277.1.S1_at--976--6331Chr10:8725767..8725791 (25 bp)
GATGCTAATTGCAGTCTCTTAATTG
LOC_Os10g17910
OsAffx.18277.1.S1_at--892--31Chr10:8725788..8725812 (25 bp)
ATTGACTTCCAAAAGGCCTATGAGC
LOC_Os10g17910
OsAffx.18277.1.S1_at--716--7651Chr10:8725824..8725848 (25 bp)
GGGAGGGCAATGTTCGACAAAGATT
LOC_Os10g17910
OsAffx.18277.1.S1_at--76--6691Chr10:8725947..8725971 (25 bp)
GTTGCGGAACAACTTGTGATTCTAA
LOC_Os10g17910
OsAffx.18277.1.S1_at--23--9011Chr10:8726039..8726063 (25 bp)
TGAAGGAACTCCATTGAGCTTGGAA
LOC_Os10g17910
OsAffx.18277.1.S1_at--881--5891Chr10:8726054..8726078 (25 bp)
GAGCTTGGAAACTGCTGTTAGTGTA
LOC_Os10g17910
OsAffx.18277.1.S1_at--93--1111Chr10:8726073..8726097 (25 bp)
AGTGTAAGTAGCTCAGTCCTTTCTG
LOC_Os10g17910
Target Sequence 
TTCGGGACATCCAAGCTGCTTACCGTGGATAAAGACTTCACTATGTTTGTAGTGGGGAGCATGGGTTACATAGACCCTGT
GTTTCATAAAACCGGGCGTTTAACACAAAAGAGTGATGTCTACAGTTTTGGAGTCGTTCTATTAGAGCTCATCACCAGGA
AGCCAACAATATATGATGCTAATTGCAGTCTCTTAATTGACTTCCAAAAGGCCTATGAGCAAGAAAATAGTGGGAGGGCA
ATGTTCGACAAAGATTTTACAATTGAAGAAGAAATATTCATTTTGGAAGAAATTGGTCGATTAGCAATGGAGTGCCTGAA
AGAAAAGGTTGAAGAACGGCCTGATATGAAGGAAGTTGCGGAACAACTTGTGATTCTAAGAAGATCTAGGAAGAGCAGAC
AAGGAAACTACAACATAAGTCCACAACAATTTGAGGAGATGAGTACTGAAGGAACTCCATTGAGCTTGGAAACTGCTGTT
AGTGTAAGTAGCTCAGTCCTTTCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18277.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis