Browse Element(s) Details


OsAffx.18284.3.S1_at

Description tigr:9633.m04896
TID=OsAffx.18284.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g518109/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g51790Os.14983.1.S1_a_at11/115+29644885..29657503structural maintenance of chromosomes family protein, putative, expressed
LOC_Os05g51790Os.14983.1.S2_a_at11/115+29644885..29657503structural maintenance of chromosomes family protein, putative, expressed
LOC_Os05g51800OsAffx.27409.1.S1_at11/115+29659567..29662333peptidyl-tRNA hydrolase family protein, putative
LOC_Os05g51800OsAffx.27409.1.S1_x_at11/115+29659567..29662333peptidyl-tRNA hydrolase family protein, putative
LOC_Os05g51800Os.24682.1.A1_at2/115+29659567..29662333peptidyl-tRNA hydrolase family protein, putative
LOC_Os05g51810OsAffx.18284.3.S1_at9/115+29665047..29666047hypothetical protein
LOC_Os05g51820OsAffx.15202.1.S1_at11/115+29666475..29667253Helix-loop-helix DNA-binding domain containing protein
LOC_Os05g51830Os.8519.1.S1_a_at11/115+29670091..29671678Histone deacetylase 2b, putative, expressed
LOC_Os05g51840NANA5+29671797..29673033Histone deacetylase 2a, putative, expressed
LOC_Os05g51850Os.12748.2.S1_x_at11/115+29675947..29678145AT hook motif family protein, expressed
LOC_Os05g51850Os.12748.1.S1_at11/115+29675947..29678145AT hook motif family protein, expressed
LOC_Os05g51860OsAffx.4685.1.S1_at10/115+29679907..29683767hypothetical protein
LOC_Os05g51870OsAffx.32051.1.S1_x_at1/115+29688175..29688624hypothetical protein
LOC_Os05g51879NANA5+29688991..29689418NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18284.3.S1_at--928--2731Chr05:29665808..29665832 (25 bp)
AAGAAGATGCTAGCTGATTCGTTGC
LOC_Os05g51810
OsAffx.18284.3.S1_at--843--5351Chr05:29665806..29665830 (25 bp)
GAAGATGCTAGCTGATTCGTTGCGA
LOC_Os05g51810
OsAffx.18284.3.S1_at--756--1291Chr05:29665804..29665828 (25 bp)
AGATGCTAGCTGATTCGTTGCGACA
LOC_Os05g51810
OsAffx.18284.3.S1_at--436--631Chr05:29665802..29665826 (25 bp)
ATGCTAGCTGATTCGTTGCGACAGA
LOC_Os05g51810
OsAffx.18284.3.S1_at--530--4851Chr05:29665800..29665824 (25 bp)
GCTAGCTGATTCGTTGCGACAGAGG
LOC_Os05g51810
OsAffx.18284.3.S1_at--1068--9991Chr05:29665800..29665822 (23 bp)
TAGCTGATTCGTTGCGACAGAGGAT
LOC_Os05g51810
OsAffx.18284.3.S1_at--238--8831NONE
TGATTCGTTGCGACAGAGGATGCTC
NONE
OsAffx.18284.3.S1_at--579--9391Chr05:29665289..29665814 (25 bp)
TCGTTGCGACAGAGGATGCTCGGCA
LOC_Os05g51810
OsAffx.18284.3.S1_at--863--4591NONE
GCGACAGAGGATGCTCGGCAGGTGG
NONE
OsAffx.18284.3.S1_at--179--611Chr05:29665147..29665171 (25 bp)
ATGCGACCTCGAGGTCGGGCCATCA
LOC_Os05g51810
OsAffx.18284.3.S1_at--305--3211Chr05:29665092..29665116 (25 bp)
CAAGGCGCGAGACTCCGGGTGGCGG
LOC_Os05g51810
Target Sequence 
AAGAAGATGCTAGCTGATTCGTTGCGACAGAGGATGCTCGGCAGGTGGGGAGCTCGTCGAGGCGAGGTGGGAGAGGACAT
CCGGCTGGCTGGCGATGCGGCGGCGGCGGCGGCGTCGTCGACGATGCGGGAGATGGGAGAGCGTCACAGGCTCACCGCGC
ATGCGACCTCGAGGTCGGGCCATCAGAGAGGCCCGGGCGGTGGCGGCGAGGACGCCAAGGCGCGAGACTCCGGGTGGCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18284.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis