Browse Element(s) Details


OsAffx.18396.1.S1_at

Description tigr:9638.m02152
TID=OsAffx.18396.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative cucumisin-like serine protease
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2545011/11Subtilisin N-terminal Region family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g25410OsAffx.30529.1.S1_at11/1110+12805802..12806286hypothetical protein
LOC_Os10g25420Os.46805.2.S1_x_at11/1110+12810970..12813202GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os10g25420Os.46805.2.S1_at11/1110+12810970..12813202GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os10g25420Os.46805.1.S1_at10/1110+12810970..12813202GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os10g25430NANA10+12819452..12822562serine-threonine protein phosphatase, putative, expressed
LOC_Os10g25450OsAffx.18396.1.S1_at11/1110+12828966..12832148Subtilisin N-terminal Region family protein, expressed
LOC_Os10g25465NANA10+12833523..12834090NA
LOC_Os10g25487Os.46451.1.S2_at11/1110+12839808..12852128Leucine Rich Repeat family protein, expressed
LOC_Os10g25487Os.46451.3.S1_x_at11/1110+12839808..12852128Leucine Rich Repeat family protein, expressed
LOC_Os10g25487Os.46451.2.S1_x_at11/1110+12839808..12852128Leucine Rich Repeat family protein, expressed
LOC_Os10g25487Os.46451.1.S1_at11/1110+12839808..12852128Leucine Rich Repeat family protein, expressed
LOC_Os10g25487Os.46451.3.S1_at11/1110+12839808..12852128Leucine Rich Repeat family protein, expressed
LOC_Os10g25487Os.45957.3.S1_x_at4/1110+12839808..12852128Leucine Rich Repeat family protein, expressed
LOC_Os10g25487Os.49445.1.S1_at2/1110+12839808..12852128Leucine Rich Repeat family protein, expressed
LOC_Os10g25487Os.45957.4.S1_x_at1/1110+12839808..12852128Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0009827biological_processcell wall modification (sensu Magnoliophyta)
GO:0005576cellular_componentextracellular region
GO:0048196cellular_componentextracellular matrix (sensu Magnoliophyta)
GO:0004252molecular_functionserine-type endopeptidase activity
GO:0004289molecular_functionsubtilase activity
GO:0008236molecular_functionserine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18396.1.S1_at--399--5291Chr10:12831549..12831573 (25 bp)
GAATGGAGCCCTGCCGCGATCAAGT
LOC_Os10g25450
OsAffx.18396.1.S1_at--864--6451Chr10:12831566..12831590 (25 bp)
GATCAAGTCTGCTCTGATGACCACT
LOC_Os10g25450
OsAffx.18396.1.S1_at--173--8871Chr10:12831580..12831604 (25 bp)
TGATGACCACTGCTTACACCGTCGA
LOC_Os10g25450
OsAffx.18396.1.S1_at--933--1291Chr10:12831626..12831650 (25 bp)
AGATGCTGCTGGAGGCTTGCTTGCA
LOC_Os10g25450
OsAffx.18396.1.S1_at--551--10151Chr10:12831697..12831721 (25 bp)
TATCTCCAGGCCTTCTATACGACAT
LOC_Os10g25450
OsAffx.18396.1.S1_at--955--9771Chr10:12831728..12831752 (25 bp)
TAAGGACTATGTTTCCTTCCTCTGC
LOC_Os10g25450
OsAffx.18396.1.S1_at--375--10151Chr10:12831843..12831867 (25 bp)
TATCCCTCGTTTTCGGTTGTGTTCA
LOC_Os10g25450
OsAffx.18396.1.S1_at--184--771Chr10:12831913..12831937 (25 bp)
ATGTCGGCCCAGCAATGTCTGTTTA
LOC_Os10g25450
OsAffx.18396.1.S1_at--540--1091Chr10:12831951..12831975 (25 bp)
AGTGGCCCTGCATCAGTCAGTGTGA
LOC_Os10g25450
OsAffx.18396.1.S1_at--643--9891Chr10:12832026..12832050 (25 bp)
TACTATGTCATATTCGCGTCTACGG
LOC_Os10g25450
OsAffx.18396.1.S1_at--274--6311Chr10:12832094..12832118 (25 bp)
GATGAGCAGCCAGCATGTTGTTCGG
LOC_Os10g25450
Target Sequence 
GAATGGAGCCCTGCCGCGATCAAGTCTGCTCTGATGACCACTGCTTACACCGTCGACAACACAAACTCTTCTCTCCGAGA
TGCTGCTGGAGGCTTGCTTGCAACCCCATTCGCCTTCGGCGCAGGCCATGTCGACCCGCAGAAGGCGCTATCTCCAGGCC
TTCTATACGACATCTCGACTAAGGACTATGTTTCCTTCCTCTGCTCCCTGAACTACACCACACCACATATCCAAGTGATC
ACTAAGATGTCCAACATCACCTGCCCAAGAAAATTCCGGCCCGGCGACCTCAACTATCCCTCGTTTTCGGTTGTGTTCAA
GAAGAAATCAAAGCATGTTATGAGGTTCAGAAGGGAGGTAACCAATGTCGGCCCAGCAATGTCTGTTTACAATGTGAAGG
TCAGTGGCCCTGCATCAGTCAGTGTGAAGGTGACACCAGCAAAGCTTGTGTTCAACAAGGTAGGGCAGAAGCAGAGATAC
TATGTCATATTCGCGTCTACGGTTGACGCAAGCAATGCGAAACCAGATTTCGGTTGGATATCCTGGATGAGCAGCCAGCA
TGTTGTTCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18396.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis