Browse Element(s) Details


OsAffx.18408.1.S1_at

Description gb:NM_196394.1
DB_XREF= gi:37534147
TID=OsAffx.18408.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative No apical meristem (NAM) protein (OSJNBa0044A10.11), mRNA.
PROD=putative No apical meristem (NAM) protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2627011/11No apical meristem protein
LOC_Os10g256304/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g26210OsAffx.22699.1.S1_x_at2/1110+13244857..13249378retrotransposon protein, putative, unclassified
LOC_Os10g26220NANA10+13251184..13254022hypothetical protein
LOC_Os10g26230NANA10+13256386..13257693hypothetical protein
LOC_Os10g26240NANA10+13260623..13261245No apical meristem protein
LOC_Os10g26250Os.46681.1.S1_at10/1110+13262038..13262852hypothetical protein
LOC_Os10g26250OsAffx.20377.1.S1_x_at3/1110+13262038..13262852hypothetical protein
LOC_Os10g26250Os.17912.2.S1_x_at1/1110+13262038..13262852hypothetical protein
LOC_Os10g26260OsAffx.30540.1.S1_at10/1110+13263143..13265849hypothetical protein
LOC_Os10g26260Os.17912.1.A1_at3/1110+13263143..13265849hypothetical protein
LOC_Os10g26260Os.40386.1.S1_at1/1110+13263143..13265849hypothetical protein
LOC_Os10g26270OsAffx.18408.1.S1_at11/1110+13266555..13268534No apical meristem protein
LOC_Os10g26270OsAffx.20377.1.S1_x_at2/1110+13266555..13268534No apical meristem protein
LOC_Os10g26280Os.46783.1.S1_a_at11/1110+13269695..13275002origin recognition complex subunit 3, putative
LOC_Os10g26290Os.46680.1.S1_x_at11/1110+13280395..13282773Transferase family protein, expressed
LOC_Os10g26300NANA10+13293165..13293575hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18408.1.S1_at--393--6232Chr10:13268096..13268120 (25 bp)
GATGGCGGATCCTGCGTCGTGTAAT
LOC_Os10g26270
OsAffx.18408.1.S1_at--508--7971Chr10:13268102..13268126 (25 bp)
GGATCCTGCGTCGTGTAATACGTTG
LOC_Os10g26270
OsAffx.18408.1.S1_at--920--9752Chr10:13268117..13268141 (25 bp)
TAATACGTTGGAACACCTGTTGCCC
LOC_Os10g26270
OsAffx.18408.1.S1_at--132--4711Chr10:13268145..13268169 (25 bp)
GCGGCGATCCCACCAGAGCCAATGG
LOC_Os10g26270
OsAffx.18408.1.S1_at--1004--3551Chr10:13268277..13268301 (25 bp)
CATCATCAGCCGCAGGAGCTGACGG
LOC_Os10g26270
OsAffx.18408.1.S1_at--646--8111Chr10:13268309..13268333 (25 bp)
GGACGGCGACGCACAGCTAGAGCTA
LOC_Os10g26270
OsAffx.18408.1.S1_at--872--892Chr10:13268333..13268357 (25 bp)
AGGCGCCGCGGAGTTTGATTCCGAA
LOC_Os10g26270
OsAffx.18408.1.S1_at--952--6812Chr10:13268345..13268369 (25 bp)
GTTTGATTCCGAACGAGTAGCCGAA
LOC_Os10g26270
OsAffx.18408.1.S1_at--334--6091Chr10:13268359..13268383 (25 bp)
GAGTAGCCGAAATGATATCCCAAAT
LOC_Os10g26270
OsAffx.18408.1.S1_at--195--6831Chr10:13268402..13268426 (25 bp)
GTTTAAATTTGAGGACGACACCATT
LOC_Os10g26270
OsAffx.18408.1.S1_at--228--3611Chr10:13268423..13268447 (25 bp)
CATTGTTAGCTTCAACGAGGTGGCG
LOC_Os10g26270
Target Sequence 
GATGGCGGATCCTGCGTCGTGTAATACGTTGGAACACCTGTTGCCCAGCGCGGCGATCCCACCAGAGCCAATGGCGCCGC
CGAAGAACTCGCCGGCGGCGCCACCACCGGCCGACGCCGGCGGCAACTACGACCACCCGGAGCTCGCCGACTACGGCGGC
GGCGTCCAGGCGCAGCACGAGCATCATCAGCCGCAGGAGCTGACGGATGGCGCGGACGGCGACGCACAGCTAGAGCTAGG
CGCCGCGGAGTTTGATTCCGAACGAGTAGCCGAAATGATATCCCAAATAATGGATGGTGAATTCGTGTTTAAATTTGAGG
ACGACACCATTGTTAGCTTCAACGAGGTGGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18408.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis