Browse Element(s) Details


OsAffx.18440.1.S1_at

Description tigr:9638.m02489
TID=OsAffx.18440.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g126301/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g12590OsAffx.19632.1.S1_at11/1112+6931547..6935835NADP-dependent oxidoreductase P1, putative, expressed
LOC_Os12g12600OsAffx.19633.1.S1_at11/1112+6944098..6946847expressed protein
LOC_Os12g12610NANA12+6949934..6950399hypothetical protein
LOC_Os12g12620NANA12+6955174..6956448retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g12630OsAffx.18440.1.S1_at1/1112+6956627..6958063hypothetical protein
LOC_Os12g12640OsAffx.19634.1.S1_at10/1112+6964506..6966110hypothetical protein
LOC_Os12g12640OsAffx.20040.1.S1_x_at1/1112+6964506..6966110hypothetical protein
LOC_Os12g12650Os.46184.1.A1_at1/1112+6970547..6976644hypothetical protein
LOC_Os12g12650OsAffx.12703.1.S1_at1/1112+6970547..6976644hypothetical protein
LOC_Os12g12664Os.53960.1.S1_at11/1112+6975799..6980990expressed protein
LOC_Os12g12664Os.50231.1.S1_x_at10/1112+6975799..6980990expressed protein
LOC_Os12g12680OsAffx.24099.1.S1_x_at1/1112+6980808..6983825transposon protein, putative, Pong sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18440.1.S1_at--1115--6631Chr10:14878648..14878904 (25 bp)
GTTGACGAGAGATATGAAGAAGCCC
NONE
OsAffx.18440.1.S1_at--276--4651Chr10:14878931..14878955 (25 bp)
GCGTCCTGCGTCAAAGCCGAGCCGG
NONE
OsAffx.18440.1.S1_at--926--4631Chr10:14878938..14878962 (25 bp)
GCGTCAAAGCCGAGCCGGCGACAGA
NONE
OsAffx.18440.1.S1_at--637--4591Chr10:14878955..14878979 (25 bp)
GCGACAGAGATCAGGGCGATGCCGA
NONE
OsAffx.18440.1.S1_at--896--1412Chr10:14879310..14879334 (25 bp)
AGACACGTCATTGCAGGTGGCGCGC
NONE
OsAffx.18440.1.S1_at--314--7011Chr10:14879344..14879368 (25 bp)
GTACTCGGCGGCATTCGTCGGAGCT
NONE
OsAffx.18440.1.S1_at--1063--8151Chr10:14879411..14879435 (25 bp)
GGAACCGGCGCAGGTCTTCGGTGGA
NONE
OsAffx.18440.1.S1_at--984--4791Chr10:14879440..14879553 (25 bp)
GCTCCCAGGCGGACGATGCTGAGAT
NONE
OsAffx.18440.1.S1_at--734--3951NONE
CGGACGATGCTGAGATTCCTTGCGG
NONE
OsAffx.18440.1.S1_at--1121--3451Chr10:14879584..14879608 (25 bp)
CAGGGCGCAAAGTGGCGGCGCATCA
NONE
OsAffx.18440.1.S1_at--334--4971Chr10:14879603..14879627 (25 bp)
GCATCAGAAAGAAGCGCCGCAGGCA
NONE
Target Sequence 
GTTGACGAGAGATATGAAGAAGCCCAGGAGGTTAGGGTCACGGCGGTGTGCGCGTCCTGCGTCAAAGCCGAGCCGGCGAC
AGAGATCAGGGCGATGCCGAGGAGCTGGCTAGGAGGCGGAGGTGGTTTGGGCGGCGAGGTCACGGGCAGCTGGAGACACG
TCATTGCAGGTGGCGCGCGGCGGCGTGGTACTCGGCGGCATTCGTCGGAGCTCGGGCAGGAGCTTGCGGCAGCGGCTGCG
GTGGTTCCCGGCGAGGAACCGGCGCAGGTCTTCGGTGGAGGCGGCTCCCAGGCGGACGATGCTGAGATTCCTTGCGGGGC
CGGCGGCGGCGTGAGGAGCAGGGCGCAAAGTGGCGGCGCATCAGAAAGAAGCGCCGCAGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18440.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis