Browse Element(s) Details


OsAffx.18461.1.S1_at

Description gb:NM_196676.1
DB_XREF= gi:37534711
TID=OsAffx.18461.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative FH protein interacting protein FIP2 (OSJNBb0016G17.5), mRNA.
PROD=putative FH protein interacting protein FIP2
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3019011/11potassium channel tetramerisation domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g30156Os.9108.1.S1_a_at11/1110+15343797..15351682Soluble starch synthase 2-1, chloroplast precursor, putative, expressed
LOC_Os10g30162Os.46581.1.S1_at11/1110+15352142..15354201Hsp20/alpha crystallin family protein, expressed
LOC_Os10g30170OsAffx.30604.1.S1_x_at11/1110+15354600..15355313hypothetical protein
LOC_Os10g30170OsAffx.30604.1.S1_at11/1110+15354600..15355313hypothetical protein
LOC_Os10g30180OsAffx.30605.1.S1_at10/1110+15359380..15360457Hsp20/alpha crystallin family protein, expressed
LOC_Os10g30190OsAffx.18461.1.S1_at11/1110+15360834..15363711potassium channel tetramerisation domain-containing protein, putative, expressed
LOC_Os10g30200OsAffx.8088.1.S1_at11/1110+15366285..15367061Skp1 family, dimerisation domain containing protein
LOC_Os10g30210OsAffx.30606.1.S1_at11/1110+15368898..15370644expressed protein
LOC_Os10g30220OsAffx.18462.1.S1_at11/1110+15371114..15371945hypothetical protein
LOC_Os10g30230OsAffx.6818.1.S1_at11/1110+15373624..15374238hypothetical protein
LOC_Os10g30240OsAffx.17314.1.S1_s_at11/1110+15374419..15377689transposon protein, putative, Mutator sub-class
LOC_Os10g30240OsAffx.17314.1.S1_at11/1110+15374419..15377689transposon protein, putative, Mutator sub-class
LOC_Os10g30250NANA10+15383861..15387095transposon protein, putative, unclassified
LOC_Os10g30260NANA10+15387735..15393887transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006813biological_processpotassium ion transport
GO:0008076cellular_componentvoltage-gated potassium channel complex
GO:0016020cellular_componentmembrane
GO:0005249molecular_functionvoltage-gated potassium channel activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18461.1.S1_at--505--5891Chr10:15362894..15362918 (25 bp)
GAGCTGACTCGCAAGGACGTGATCA
LOC_Os10g30190
OsAffx.18461.1.S1_at--890--6451Chr10:15362874..15362898 (25 bp)
GATCAAGTGCATCCAGGCTGATAAA
LOC_Os10g30190
OsAffx.18461.1.S1_at--240--6411Chr10:15362855..15362879 (25 bp)
GATAAAGTCCGGTTCCGAGGCGTCA
LOC_Os10g30190
OsAffx.18461.1.S1_at--1159--5811Chr10:15362701..15362840 (25 bp)
GACCTGTCCAAGCTTGACTTATCGG
LOC_Os10g30190
OsAffx.18461.1.S1_at--1089--10291Chr10:15362637..15362661 (25 bp)
TTTCCCTTGCCAATCTTTACAAAGC
LOC_Os10g30190
OsAffx.18461.1.S1_at--368--191Chr10:15362399..15362633 (25 bp)
ATTTCGGGAGGTTCAAGCTTCTCGA
LOC_Os10g30190
OsAffx.18461.1.S1_at--417--9511Chr10:15362380..15362404 (25 bp)
TCTCGATCTTCGTTCAATTATGCTA
LOC_Os10g30190
OsAffx.18461.1.S1_at--979--1271Chr10:15361995..15362019 (25 bp)
AGATCTTCGTTCAGCACATCTGCAG
LOC_Os10g30190
OsAffx.18461.1.S1_at--684--5811Chr10:15361515..15361539 (25 bp)
GACCTTACAGGTGCCAATTTGACAG
LOC_Os10g30190
OsAffx.18461.1.S1_at--663--7171Chr10:15361195..15361219 (25 bp)
GTCTGGTTCAAACTTGCAAGGTGCA
LOC_Os10g30190
OsAffx.18461.1.S1_at--544--2271Chr10:15361171..15361195 (25 bp)
AAATCTTCAGCGAGCTTACCTGCGG
LOC_Os10g30190
Target Sequence 
GAGCTGACTCGCAAGGACGTGATCAAGTGCATCCAGGCTGATAAAGTCCGGTTCCGAGGCGTCAACCTTTCTGGCCTTGA
CCTGTCCAAGCTTGACTTATCGGAAGTTGATTTCAGTTGCGGGTGTATTGAGGAGACAAAATTTTCCCTTGCCAATCTTT
ACAAAGCTAAATTTCGGGAGGTTCAAGCTTCTCGATCTTCGTTCAATTATGCTAATTTGCGTGAGTGTGAGTTTGTAGGA
GCAAATCTCCAAGAGTCTACTTTGGACAGAGCCAACCTACAAAGTGCAAACCTGCAAGATGCATGCTTGGTAAAATGTAG
CTTCATTGAAACAGATCTTCGTTCAGCACATCTGCAGAGGGCAGACCTTACAGGTGCCAATTTGACAGGAGCTAACCTTG
AAGGAGCCAATCTGAAGGGAGCTAAATTGTCTGGTTCAAACTTGCAAGGTGCAAATCTTCAGCGAGCTTACCTGCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18461.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis