Browse Element(s) Details


OsAffx.18494.1.S1_at

Description tigr:9638.m02856
TID=OsAffx.18494.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3280011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g32750OsAffx.18492.1.S1_at11/1110+16823554..16825374von Willebrand factor type A domain containing protein
LOC_Os10g32750OsAffx.31678.3.S1_x_at1/1110+16823554..16825374von Willebrand factor type A domain containing protein
LOC_Os10g32760OsAffx.28308.2.S1_x_at11/1110+16826112..16828353von Willebrand factor type A domain containing protein, expressed
LOC_Os10g32770Os.46667.1.S1_x_at11/1110+16828724..16833806WD-repeat protein 26, putative, expressed
LOC_Os10g32770Os.24696.1.A1_s_at10/1110+16828724..16833806WD-repeat protein 26, putative, expressed
LOC_Os10g32780Os.21180.2.S1_x_at11/1110+16837350..16837759RING zinc finger ankyrin protein, putative
LOC_Os10g32780OsAffx.23573.1.S1_s_at11/1110+16837350..16837759RING zinc finger ankyrin protein, putative
LOC_Os10g32790OsAffx.30645.1.S1_at10/1110+16839866..16841873hypothetical protein
LOC_Os10g32800OsAffx.18494.1.S1_at11/1110+16846326..16849108hypothetical protein
LOC_Os10g32810Os.28098.1.S1_at11/1110+16851369..16854068Glycosyl hydrolase family 14 protein, expressed
LOC_Os10g32820Os.2247.1.S1_at11/1110+16854922..1685645460S ribosomal protein L21, putative, expressed
LOC_Os10g32830Os.23241.2.S1_x_at11/1110+16857216..16860503kinase, pfkB family protein
LOC_Os10g32830Os.23241.1.S1_x_at7/1110+16857216..16860503kinase, pfkB family protein
LOC_Os10g32830Os.23241.1.S1_at5/1110+16857216..16860503kinase, pfkB family protein
LOC_Os10g32840NANA10+16861914..16862491hypothetical protein
LOC_Os10g32850Os.10946.1.S1_at11/1110+16862955..16866271expressed protein
LOC_Os10g32860OsAffx.30646.1.S1_at11/1110+16869048..16871141hypothetical protein
LOC_Os10g32870Os.46562.1.S1_at11/1110+16872128..16873689ribosomal protein L11 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18494.1.S1_at--687--10591Chr10:16847335..16847359 (25 bp)
TTCTCCTTTGGATTTATGGGCTATT
LOC_Os10g32800
OsAffx.18494.1.S1_at--398--1051Chr10:16848222..16848246 (25 bp)
AGGTGATGGGATGCGCGACCCTTCT
LOC_Os10g32800
OsAffx.18494.1.S1_at--634--3731Chr10:16848266..16848290 (25 bp)
CTCACTGCACGAGCTCAATTTCAGA
LOC_Os10g32800
OsAffx.18494.1.S1_at--871--8071Chr10:16848300..16848324 (25 bp)
GGAGCTAAGCTCGATTTCTGGCGTT
LOC_Os10g32800
OsAffx.18494.1.S1_at--1034--191Chr10:16848313..16848337 (25 bp)
ATTTCTGGCGTTTTCAGCATGCCTA
LOC_Os10g32800
OsAffx.18494.1.S1_at--252--4991Chr10:16848329..16848353 (25 bp)
GCATGCCTAGCTCAAGACCATACAA
LOC_Os10g32800
OsAffx.18494.1.S1_at--521--7571Chr10:16848871..16848894 (24 bp)
GGGCGTCTCAAATACACCTGATCAA
LOC_Os10g32800
OsAffx.18494.1.S1_at--349--5411Chr10:16848922..16848946 (25 bp)
GAGAGCCCAAACTCCAATCCGGAAG
LOC_Os10g32800
OsAffx.18494.1.S1_at--280--9211Chr10:16848934..16848958 (25 bp)
TCCAATCCGGAAGACGCTAGCGTGC
LOC_Os10g32800
OsAffx.18494.1.S1_at--640--5991Chr10:16848974..16848998 (25 bp)
GAGACGCCAAGCTTTTGCCTAATTG
LOC_Os10g32800
OsAffx.18494.1.S1_at--624--8931Chr10:16849054..16849078 (25 bp)
TGACGAACTGACTAGCGACAATGAT
LOC_Os10g32800
Target Sequence 
TTCTCCTTTGGATTTATGGGCTATTTCAGTTTGTTGCTACTTAAACCTTACCAAATTTTGGGAAATAAACCGAAATTTTC
AACTCTGAAGGGAGGTGATGGGATGCGCGACCCTTCTCTCATGCACATGGGTGGCCCTCACTGCACGAGCTCAATTTCAG
ATGATCATGAGGAGCTAAGCTCGATTTCTGGCGTTTTCAGCATGCCTAGCTCAAGACCATACAACGTCCCTCCCCTGCAC
GCGGGGGCGTCTCAAATACACCTGATCAAAGAAAAACAACAAGAACAACAAATCAGGAGAGCCCAAACTCCAATCCGGAA
GACGCTAGCGTGCGCGGAAACATCGCGTGAGACGCCAAGCTTTTGCCTAATTGCCTCCCAGGGGAGGCATCCAACGCTGT
CCGTCCATTCTCCCCTCCGCGTTTCTGATGACGAACTGACTAGCGACAATGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18494.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis