Browse Element(s) Details


OsAffx.18575.1.S1_x_at

Description tigr:9638.m03532
TID=OsAffx.18575.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative flavanone 3-hydroxylase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3914011/11oxidoreductase, 2OG-Fe oxygenase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g39130Os.37813.1.S1_at10/1110+20533326..20543951Agamous-like MADS box protein AGL19, putative, expressed
LOC_Os10g39130Os.16010.1.S1_at1/1110+20533326..20543951Agamous-like MADS box protein AGL19, putative, expressed
LOC_Os10g39140OsAffx.18575.1.S1_x_at11/1110+20556723..20562533oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g39140Os.39583.1.A1_at10/1110+20556723..20562533oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g39140OsAffx.23696.1.S1_x_at1/1110+20556723..20562533oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g39150Os.24307.1.S1_at11/1110+20563883..20565534expressed protein
LOC_Os10g39160OsAffx.20168.1.S1_at11/1110+20566022..20567148Peroxidase family protein
LOC_Os10g39170Os.5099.1.S1_at11/1110+20570460..20572645Peroxidase family protein, expressed
LOC_Os10g39190OsAffx.30718.1.S1_x_at11/1110+20586477..20587415B3 DNA binding domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0009058biological_processbiosynthesis
GO:0009813biological_processflavonoid biosynthesis
GO:0019748biological_processsecondary metabolism
GO:0016706molecular_functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18575.1.S1_x_at--76--5951Chr10:20562002..20562026 (25 bp)
GAGCACTGCCTCGAGCTGTTCAGGA
LOC_Os10g39140
OsAffx.18575.1.S1_x_at--605--3871Chr10:20562017..20562041 (25 bp)
CTGTTCAGGACTTAGCTCATCGCAA
LOC_Os10g39140
OsAffx.18575.1.S1_x_at--336--7391Chr10:20562070..20562094 (25 bp)
GTGAGGCGAACACTACACACTGTGA
LOC_Os10g39140
OsAffx.18575.1.S1_x_at--392--3851Chr10:20562097..20562121 (25 bp)
CTGACCACCTCCGAATTAAGTTTGA
LOC_Os10g39140
OsAffx.18575.1.S1_x_at--1071--6851Chr10:20562116..20562140 (25 bp)
GTTTGAGTTCTCTCTTGGATGCCTA
LOC_Os10g39140
OsAffx.18575.1.S1_x_at--880--6351Chr10:20562133..20562157 (25 bp)
GATGCCTATTTGCTCTCTGTTAATT
LOC_Os10g39140
OsAffx.18575.1.S1_x_at--908--10851Chr10:20562156..20562180 (25 bp)
TTGGACACTAAATTCCTCAGCGGCC
LOC_Os10g39140
OsAffx.18575.1.S1_x_at--273--3811Chr10:20562180..20562204 (25 bp)
CTCCATTCCTAGCTTCACTTATAAG
LOC_Os10g39140
OsAffx.18575.1.S1_x_at--471--8031Chr10:20562310..20562334 (25 bp)
GGAGGGTCTCTTAGTATCTTTCTTT
LOC_Os10g39140
OsAffx.18575.1.S1_x_at--188--8271Chr10:20562395..20562419 (25 bp)
GGCATCCTTTGTGGTTGTAGAACTC
LOC_Os10g39140
OsAffx.18575.1.S1_x_at--661--10151Chr10:20562448..20562472 (25 bp)
TATCGTTTCGCTTATTCCCGGAATA
LOC_Os10g39140
Target Sequence 
GAGCACTGCCTCGAGCTGTTCAGGACTTAGCTCATCGCAAGCTCACTCTACGAGTCGACATTAAAACCGTGAGGCGAACA
CTACACACTGTGACCCTGACCACCTCCGAATTAAGTTTGAGTTCTCTCTTGGATGCCTATTTGCTCTCTGTTAATTGGAC
ACTAAATTCCTCAGCGGCCTCCATTCCTAGCTTCACTTATAAGGAAAAAGAGAGCACAAAGAGATTTCGTTAATAGCCAT
CATAGGGAAGTGTGGATTGTGTTGAAGGTCCTAATCAGTTGGTTTTTTGTCCCTGGTTTTGGATATTAGGAGGGTCTCTT
AGTATCTTTCTTTTTGTGGAACAACTTTCAGTGTCTGTAACTCTGTATTCCTTTTTTTACTTGCAAAGGGAATGGCATCC
TTTGTGGTTGTAGAACTCCTTTTCAATATCAGTCTTTATCATACTCTATCGTTTCGCTTATTCCCGGAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18575.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis