Browse Element(s) Details


OsAffx.18596.1.S1_x_at

Description tigr:9638.m03743
TID=OsAffx.18596.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative DNA binding protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4113011/11AP2 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g41110Os.27665.1.S1_at6/1110+21750525..21753511Autophagocytosis associated protein, N-terminal domain containing protein
LOC_Os10g41120Os.11299.1.S1_x_at10/1110+21754135..21757445expressed protein
LOC_Os10g41130OsAffx.18596.1.S1_at11/1110+21769936..21770869AP2 domain containing protein, expressed
LOC_Os10g41130OsAffx.18596.1.S1_x_at11/1110+21769936..21770869AP2 domain containing protein, expressed
LOC_Os10g41150Os.19725.1.S1_x_at10/1110+21775681..21779426aminotransferase, classes I and II family protein, expressed
LOC_Os10g41150Os.14940.1.S1_at9/1110+21775681..21779426aminotransferase, classes I and II family protein, expressed
LOC_Os10g41150Os.25227.1.S1_x_at1/1110+21775681..21779426aminotransferase, classes I and II family protein, expressed
LOC_Os10g41160Os.16083.1.S1_at11/1110+21782610..21784063expressed protein
LOC_Os10g41170Os.57082.1.S1_at11/1110+21787466..21790532oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os10g41180Os.46183.1.S1_at10/1110+21792111..21794280expressed protein
LOC_Os10g41190Os.26817.1.S1_at11/1110+21794588..21798099Hexose carrier protein HEX6, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009825biological_processmultidimensional cell growth
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18596.1.S1_x_at--875--5051Chr10:21770082..21770106 (25 bp)
GCAGCAGCTGTTCGACCTGCCGGAC
LOC_Os10g41130
OsAffx.18596.1.S1_x_at--987--1751Chr10:21770068..21770092 (25 bp)
ACCTGCCGGACTTGCTGTTCGACAT
LOC_Os10g41130
OsAffx.18596.1.S1_x_at--40--8131Chr10:21770061..21770085 (25 bp)
GGACTTGCTGTTCGACATCCAGGAC
LOC_Os10g41130
OsAffx.18596.1.S1_x_at--1082--10691Chr10:21770057..21770081 (25 bp)
TTGCTGTTCGACATCCAGGACGGGC
LOC_Os10g41130
OsAffx.18596.1.S1_x_at--995--9351Chr10:21770050..21770074 (25 bp)
TCGACATCCAGGACGGGCCGTTCGG
LOC_Os10g41130
OsAffx.18596.1.S1_x_at--235--1911Chr10:21769996..21770020 (25 bp)
ACGTCGACGAGGTCAATGCGGAGCT
LOC_Os10g41130
OsAffx.18596.1.S1_x_at--228--9371Chr10:21769993..21770017 (25 bp)
TCGACGAGGTCAATGCGGAGCTCCG
LOC_Os10g41130
OsAffx.18596.1.S1_x_at--1116--9711Chr10:21769984..21770008 (25 bp)
TCAATGCGGAGCTCCGGCTTGAGGA
LOC_Os10g41130
OsAffx.18596.1.S1_x_at--209--5911Chr10:21769976..21770000 (25 bp)
GAGCTCCGGCTTGAGGAGCCATTGC
LOC_Os10g41130
OsAffx.18596.1.S1_x_at--498--9271Chr10:21769972..21769996 (25 bp)
TCCGGCTTGAGGAGCCATTGCTTTG
LOC_Os10g41130
OsAffx.18596.1.S1_x_at--595--10771Chr10:21769966..21769990 (25 bp)
TTGAGGAGCCATTGCTTTGGGACTT
LOC_Os10g41130
Target Sequence 
GCAGCAGCTGTTCGACCTGCCGGACTTGCTGTTCGACATCCAGGACGGGCCGTTCGGGTTCCCGGCGATGTGGGCGCCGC
TCGCCGACGTCGACGAGGTCAATGCGGAGCTCCGGCTTGAGGAGCCATTGCTTTGGGACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18596.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis