Browse Element(s) Details


OsAffx.18650.1.S1_at

Description tigr:9639.m00225
TID=OsAffx.18650.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g031809/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g03130OsAffx.19459.1.S1_at11/1111+1127569..1129824hypothetical protein
LOC_Os11g03140OsAffx.6978.1.S1_at11/1111+1130699..1131363hypothetical protein
LOC_Os11g03150OsAffx.18648.1.S1_at11/1111+1132890..1133960hypothetical protein
LOC_Os11g03160Os.24025.1.S1_at11/1111+1135059..1140412Glycosyl transferase family 8 protein, expressed
LOC_Os11g03160Os.24025.1.S1_s_at11/1111+1135059..1140412Glycosyl transferase family 8 protein, expressed
LOC_Os11g03160Os.57150.1.S1_at4/1111+1135059..1140412Glycosyl transferase family 8 protein, expressed
LOC_Os11g03170NANA11+1148403..1149619hypothetical protein
LOC_Os11g03180OsAffx.18650.1.S1_at9/1111+1153273..1155157hypothetical protein
LOC_Os11g03190OsAffx.31557.1.S1_at11/1111+1157468..1159597hypothetical protein
LOC_Os11g03190Os.52945.1.S1_at3/1111+1157468..1159597hypothetical protein
LOC_Os11g03190OsAffx.31558.1.S1_x_at2/1111+1157468..1159597hypothetical protein
LOC_Os11g03200Os.52764.1.S1_x_at11/1111+1161153..1163911pentatricopeptide, putative, expressed
LOC_Os11g03200Os.52764.1.S1_at10/1111+1161153..1163911pentatricopeptide, putative, expressed
LOC_Os11g03210OsAffx.18651.1.S1_at11/1111+1165520..1166164Glutathione S-transferase, N-terminal domain containing protein
LOC_Os11g03210OsAffx.19460.1.S1_at2/1111+1165520..1166164Glutathione S-transferase, N-terminal domain containing protein
LOC_Os11g03220OsAffx.19461.2.S1_x_at11/1111+1166727..1169429RNA recognition motif, putative
LOC_Os11g03220OsAffx.19461.2.S1_at11/1111+1166727..1169429RNA recognition motif, putative
LOC_Os11g03220OsAffx.19461.1.S1_at6/1111+1166727..1169429RNA recognition motif, putative
LOC_Os11g03230Os.11908.1.S1_s_at11/1111+1174940..1178023GDA1/CD39 family protein, expressed
LOC_Os11g03230Os.11718.1.S1_at6/1111+1174940..1178023GDA1/CD39 family protein, expressed
LOC_Os11g03230Os.47730.2.S1_x_at6/1111+1174940..1178023GDA1/CD39 family protein, expressed
LOC_Os11g03230Os.47730.1.S1_x_at5/1111+1174940..1178023GDA1/CD39 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18650.1.S1_at--322--3851Chr11:1155076..1155100 (25 bp)
CTGATTCCAAGCTGTTTCGAGTGGG
LOC_Os11g03180
OsAffx.18650.1.S1_at--998--7411Chr11:1155004..1155028 (25 bp)
GTGTTGCTGGCCTATCCATCGCTTG
LOC_Os11g03180
OsAffx.18650.1.S1_at--303--4451Chr11:1154995..1155019 (25 bp)
GCCTATCCATCGCTTGGCGAAGGGA
LOC_Os11g03180
OsAffx.18650.1.S1_at--1127--9051NONE
TGCTTCTAAATCGTGTGGTCCCTGA
NONE
OsAffx.18650.1.S1_at--244--9411Chr11:1154196..1154220 (25 bp)
TCGTGTGGTCCCTGATTGGAATCAT
LOC_Os11g03180
OsAffx.18650.1.S1_at--468--6613Chr06:7173688..7173711 (24 bp)
GATTGGAATCATCCGATACCTGATG
NONE
OsAffx.18650.1.S1_at--775--313Chr06:7173702..7173726 (25 bp)
ATACCTGATGAGTATCACCGTTTGG
NONE
OsAffx.18650.1.S1_at--649--6072Chr03:26278109..26278130 (22 bp)
GAGTATCACCGTTTGGACAGAAATA
NONE
OsAffx.18650.1.S1_at--515--3111NONE
AATATGTATCAGAACTCTGCTGTCA
NONE
OsAffx.18650.1.S1_at--273--9131Chr11:1153372..1153396 (25 bp)
TGCTGTCACCATACGCCAGAGGCAG
LOC_Os11g03180
OsAffx.18650.1.S1_at--916--9951Chr11:1153361..1153385 (25 bp)
TACGCCAGAGGCAGGATGTCATCCG
LOC_Os11g03180
Target Sequence 
CTGATTCCAAGCTGTTTCGAGTGGGGTACGGTGCCGGCGACGAAAAAGATGAAGACGGAGGAGGATTTGGAGGTGTTGCT
GGCCTATCCATCGCTTGGCGAAGGGAAGAAGAAGAAGAAGGTGGTGGTGAAGAGGCTGGGGAAGGAGGAGGTGGAGAGGC
TGCTTCTAAATCGTGTGGTCCCTGATTGGAATCATCCGATACCTGATGAGTATCACCGTTTGGACAGAAATATGTATCAG
AACTCTGCTGTCACCATACGCCAGAGGCAGGATGTCATCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18650.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis