Browse Element(s) Details


OsAffx.18651.1.S1_at

Description tigr:9639.m00228
TID=OsAffx.18651.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to probable glutathione s-transferase (ec 2.5.1.18) (pathogenesis-related protein 1). (potato
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0321011/11Glutathione S-transferase, N-terminal domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g03170NANA11+1148403..1149619hypothetical protein
LOC_Os11g03180OsAffx.18650.1.S1_at9/1111+1153273..1155157hypothetical protein
LOC_Os11g03190OsAffx.31557.1.S1_at11/1111+1157468..1159597hypothetical protein
LOC_Os11g03190Os.52945.1.S1_at3/1111+1157468..1159597hypothetical protein
LOC_Os11g03190OsAffx.31558.1.S1_x_at2/1111+1157468..1159597hypothetical protein
LOC_Os11g03200Os.52764.1.S1_x_at11/1111+1161153..1163911pentatricopeptide, putative, expressed
LOC_Os11g03200Os.52764.1.S1_at10/1111+1161153..1163911pentatricopeptide, putative, expressed
LOC_Os11g03210OsAffx.18651.1.S1_at11/1111+1165520..1166164Glutathione S-transferase, N-terminal domain containing protein
LOC_Os11g03210OsAffx.19460.1.S1_at2/1111+1165520..1166164Glutathione S-transferase, N-terminal domain containing protein
LOC_Os11g03220OsAffx.19461.2.S1_x_at11/1111+1166727..1169429RNA recognition motif, putative
LOC_Os11g03220OsAffx.19461.2.S1_at11/1111+1166727..1169429RNA recognition motif, putative
LOC_Os11g03220OsAffx.19461.1.S1_at6/1111+1166727..1169429RNA recognition motif, putative
LOC_Os11g03230Os.11908.1.S1_s_at11/1111+1174940..1178023GDA1/CD39 family protein, expressed
LOC_Os11g03230Os.11718.1.S1_at6/1111+1174940..1178023GDA1/CD39 family protein, expressed
LOC_Os11g03230Os.47730.2.S1_x_at6/1111+1174940..1178023GDA1/CD39 family protein, expressed
LOC_Os11g03230Os.47730.1.S1_x_at5/1111+1174940..1178023GDA1/CD39 family protein, expressed
LOC_Os11g03240OsAffx.7468.1.S1_at6/1111+1185210..1188669MATE efflux family protein, expressed
LOC_Os11g03240Os.11241.1.S1_at6/1111+1185210..1188669MATE efflux family protein, expressed
LOC_Os11g03250NANA11+1189926..1193965retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0009407biological_processtoxin catabolism
GO:0005737cellular_componentcytoplasm
GO:0004364molecular_functionglutathione transferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18651.1.S1_at--967--8811Chr11:1165563..1165587 (25 bp)
TGTTGGGCATATGGTCGAGCCCCTA
LOC_Os11g03210
OsAffx.18651.1.S1_at--1041--5851Chr11:1165579..1165603 (25 bp)
GAGCCCCTACGTTGTCAAAGTGATA
LOC_Os11g03210
OsAffx.18651.1.S1_at--1136--371Chr11:1165616..1165640 (25 bp)
ATCAAACACGTGGAGTATGACATCG
LOC_Os11g03210
OsAffx.18651.1.S1_at--406--9471Chr11:1165648..1165672 (25 bp)
TCTGAGGAATAAGGGCAACCTGCTT
LOC_Os11g03210
OsAffx.18651.1.S1_at--218--6431Chr11:1165711..1165735 (25 bp)
GATCTATCAAGGCAAACCATCAGAC
LOC_Os11g03210
OsAffx.18651.1.S1_at--387--8231Chr11:1165721..1165745 (25 bp)
GGCAAACCATCAGACGTCATAATCG
LOC_Os11g03210
OsAffx.18651.1.S1_at--154--4031Chr11:1165735..1165759 (25 bp)
CGTCATAATCGAGTTCATCGATGAC
LOC_Os11g03210
OsAffx.18651.1.S1_at--359--3531Chr11:1165750..1165774 (25 bp)
CATCGATGACGTTTGGAAGGACTCC
LOC_Os11g03210
OsAffx.18651.1.S1_at--828--8911Chr11:1165756..1165780 (25 bp)
TGACGTTTGGAAGGACTCCGGCCAG
LOC_Os11g03210
OsAffx.18651.1.S1_at--188--4691Chr11:1165783..1166110 (25 bp)
GCGGATCTACAGTACTCAGCTGTCA
LOC_Os11g03210
OsAffx.18651.1.S1_at--660--2011Chr11:1166102..1166123 (22 bp)
ACTCAGCTGTCACCTCCGATTTGGA
LOC_Os11g03210
Target Sequence 
TGTTGGGCATATGGTCGAGCCCCTACGTTGTCAAAGTGATATGGGCACTAAGGATCAAACACGTGGAGTATGACATCGAA
GAAGATCTGAGGAATAAGGGCAACCTGCTTCTGGAGTGCAACCCCGTGCATCAGAAGGTCCCTGTGCTGATCTATCAAGG
CAAACCATCAGACGTCATAATCGAGTTCATCGATGACGTTTGGAAGGACTCCGGCCAGGGGCGGATCTACAGTACTCAGC
TGTCACCTCCGATTTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18651.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis