Browse Element(s) Details


OsAffx.18681.1.S1_s_at

Description tigr:9639.m00433
TID=OsAffx.18681.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AY054173 AT3g10020T22K18_16
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0517011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g05130Os.52376.1.S1_at11/1111+2243564..2251633PHD-finger family protein, expressed
LOC_Os11g05140OsAffx.18679.1.S1_at11/1111+2253062..2257005expressed protein
LOC_Os11g05140Os.10529.1.S1_s_at11/1111+2253062..2257005expressed protein
LOC_Os11g05150NANA11+2260356..2261258hydroxyproline-rich glycoprotein family protein, putative
LOC_Os11g05160Os.47918.1.S1_at11/1111+2266868..2269937expressed protein
LOC_Os11g05170OsAffx.18681.1.S1_s_at11/1111+2272259..2272979expressed protein
LOC_Os11g05180Os.24492.1.S1_at11/1111+2274583..2277474expressed protein
LOC_Os11g05180Os.20319.1.S1_at11/1111+2274583..2277474expressed protein
LOC_Os11g05190Os.1307.1.S1_a_at11/1111+2287185..2288453Phytosulfokines 2 precursor, putative, expressed
LOC_Os11g05200OsAffx.30824.1.S1_at11/1111+2293555..2294286Zinc finger, C3HC4 type family protein
LOC_Os11g05210OsAffx.24267.1.S1_at1/1111+2295691..2302619retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18681.1.S1_s_at--35--10691Chr11:2272667..2272691 (25 bp)
TTGCCAAGGAGGTCGTCATCGGCGA
LOC_Os11g05170
OsAffx.18681.1.S1_s_at--431--1531Chr11:2272769..2272793 (25 bp)
AGCAGTAGTCGAGTCTCGCGCCGCG
LOC_Os11g05170
OsAffx.18681.1.S1_s_at--186--4171Chr11:2272801..2272825 (25 bp)
CGCCATTAGCCATTTCGGAGCTGAT
LOC_Os11g05170
OsAffx.18681.1.S1_s_at--1154--1672Chr11:2272808..2272832 (25 bp)
AGCCATTTCGGAGCTGATGTCTAAT
LOC_Os11g05170
OsAffx.18681.1.S1_s_at--550--1611Chr11:2272819..2272843 (25 bp)
AGCTGATGTCTAATGGTCGTTGTGC
LOC_Os11g05170
OsAffx.18681.1.S1_s_at--741--3731Chr11:2272828..2272852 (25 bp)
CTAATGGTCGTTGTGCGTTGTGTGT
LOC_Os11g05170
OsAffx.18681.1.S1_s_at--351--7451Chr11:2272859..2272883 (25 bp)
GTGTGTTTTGGGTTCTAAACTGCTA
LOC_Os11g05170
OsAffx.18681.1.S1_s_at--952--331Chr11:2272883..2272907 (25 bp)
ATAATTACTAGTCTCCTCAGTCCTC
LOC_Os11g05170
OsAffx.18681.1.S1_s_at--645--3751Chr11:2272898..2272922 (25 bp)
CTCAGTCCTCAGTGGTTTGCATGCA
LOC_Os11g05170
OsAffx.18681.1.S1_s_at--31--7271Chr11:2272902..2272926 (25 bp)
GTCCTCAGTGGTTTGCATGCATGTA
LOC_Os11g05170
OsAffx.18681.1.S1_s_at--760--9051Chr11:2272919..2272943 (25 bp)
TGCATGTAAAAAATCGTGTCTCGTT
LOC_Os11g05170
Target Sequence 
TTGCCAAGGAGGTCGTCATCGGCGAGGTGGAGGTCGCCAAGGTCGCCGAGGCCAGGGACGGCGTCGACGTCGTCGCGCCG
GCGCCGCTGCTCCAGCAAGAGCAGCAGTAGTCGAGTCTCGCGCCGCGCCGCGCCCGCCATTAGCCATTTCGGAGCTGATG
TCTAATGGTCGTTGTGCGTTGTGTGTGACTGCGTGTGTTTTGGGTTCTAAACTGCTATAATTACTAGTCTCCTCAGTCCT
CAGTGGTTTGCATGCATGTAAAAAATCGTGTCTCGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18681.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis