Browse Element(s) Details


OsAffx.18687.1.S1_x_at

Description tigr:9639.m00454
TID=OsAffx.18687.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to R84035 come from this gene.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g053909/11Major Facilitator Superfamily protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g05380Os.14105.1.S1_at11/1111+2386354..2388224Cytochrome P450 family protein, expressed
LOC_Os11g05390Os.54195.1.S1_at11/1111+2409502..2419050Major Facilitator Superfamily protein, expressed
LOC_Os11g05390Os.21031.1.S1_at10/1111+2409502..2419050Major Facilitator Superfamily protein, expressed
LOC_Os11g05390OsAffx.18687.1.S1_x_at9/1111+2409502..2419050Major Facilitator Superfamily protein, expressed
LOC_Os11g05400Os.5152.1.S1_at11/1111+2419507..2422484Ser/Thr protein phosphatase family protein, expressed
LOC_Os11g05410Os.13516.1.S1_at2/1111+2428893..2432704calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os11g05410OsAffx.9512.1.S1_x_at1/1111+2428893..2432704calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os11g05420OsAffx.7002.1.S1_at11/1111+2433667..2435897hypothetical protein
LOC_Os11g05430OsAffx.18688.1.S1_at8/1111+2438566..2439788hypothetical protein
LOC_Os11g05440OsAffx.7003.1.S1_at11/1111+2441129..2441608expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0003723molecular_functionRNA binding
GO:0008493molecular_functiontetracycline transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18687.1.S1_x_at--275--8291Chr11:2411238..2411261 (24 bp)
GGCATTGGTTCAATCTTTTCGCAGA
LOC_Os11g05390
OsAffx.18687.1.S1_x_at--924--9331Chr11:2411115..2411135 (21 bp)
TCGCAGATTTTGGTACTCCCTGTTA
LOC_Os11g05390
OsAffx.18687.1.S1_x_at--492--6111Chr11:2411066..2411090 (25 bp)
GAGTCCTATGCGTTGGGATACTTGC
LOC_Os11g05390
OsAffx.18687.1.S1_x_at--1132--7931Chr11:2411052..2411075 (24 bp)
GGATACTTGCATCTGTTGCCTACGC
LOC_Os11g05390
OsAffx.18687.1.S1_x_at--422--9951NONE
TACGCTGTCCTGTATGGTTTGGCAT
NONE
OsAffx.18687.1.S1_x_at--516--6051Chr11:2410803..2410939 (25 bp)
GAGTTACTGGGTTCCTTATCTTACT
LOC_Os11g05390
OsAffx.18687.1.S1_x_at--1149--431Chr11:2410786..2410810 (25 bp)
ATCTTACTTCCTCATTGGGTGTCAT
LOC_Os11g05390
OsAffx.18687.1.S1_x_at--719--7711Chr11:2410770..2410794 (25 bp)
GGGTGTCATCTATGTTCTGGTCAAA
LOC_Os11g05390
OsAffx.18687.1.S1_x_at--752--5311NONE
GAAGTGGACTCATCTGACCAGGGAA
NONE
OsAffx.18687.1.S1_x_at--814--2151Chr11:2410331..2410355 (25 bp)
ACAGCTGTACTGTTGGCACCATTGT
LOC_Os11g05390
OsAffx.18687.1.S1_x_at--846--6051Chr11:2409969..2409993 (25 bp)
GAGTTGCAGTTCCAGATCAGCTTGA
LOC_Os11g05390
Target Sequence 
GGCATTGGTTCAATCTTTTCGCAGATTTTGGTACTCCCTGTTATTATCAATACAGTTGGTGAGAAGGGAGTCCTATGCGT
TGGGATACTTGCATCTGTTGCCTACGCTGTCCTGTATGGTTTGGCATGGAGTTACTGGGTTCCTTATCTTACTTCCTCAT
TGGGTGTCATCTATGTTCTGGTCAAACCAGCTACTTATGCAATCATCTCTGGGGAAGTGGACTCATCTGACCAGGGAAAG
GCACAAGGATTCATTTCAACTGTGAAATCCACAGCTGTACTGTTGGCACCATTGTTCATGAGCCCCCTGACCTCTTACTT
CATTTCAGAACAAGCCCCCTTCAACTGCAAAGGTTTCAGTTTCCTCGTTGCCGGTTTCTTCTTGGCAATATCTTTGGGCA
TTTCTTTCATGCTTAAGCCAGAAGCCAAATGCACAAGAGTTGCAGTTCCAGATCAGCTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18687.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis