Browse Element(s) Details


OsAffx.18697.2.A1_at

Description tigr:9630.m00939
TID=OsAffx.18697.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g284307/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g28400NANA11+15842208..15847228retrotransposon protein, putative, unclassified
LOC_Os11g28410Os.7544.1.S1_at9/1111+15847738..15858186retrotransposon protein, putative, unclassified
LOC_Os11g28410Os.5217.1.S1_at1/1111+15847738..15858186retrotransposon protein, putative, unclassified
LOC_Os11g28420Os.52253.1.S1_at11/1111+15864770..15865563expressed protein
LOC_Os11g28420OsAffx.8000.1.S1_x_at1/1111+15864770..15865563expressed protein
LOC_Os11g28430OsAffx.31183.1.S1_at10/1111+15867195..15869881hypothetical protein
LOC_Os11g28430OsAffx.18697.2.A1_at7/1111+15867195..15869881hypothetical protein
LOC_Os11g28440OsAffx.19052.1.S1_at10/1111+15873308..15874748hypothetical protein
LOC_Os11g28450OsAffx.19053.1.S1_at11/1111+15876188..15876945hypothetical protein
LOC_Os11g28460OsAffx.8934.1.S1_x_at1/1111+15877993..15878668hypothetical protein
LOC_Os11g28470OsAffx.19055.1.S1_at11/1111+15883922..15885418hypothetical protein
LOC_Os11g28480OsAffx.31184.1.S1_at10/1111+15886678..15893723expressed protein
LOC_Os11g28480Os.3448.1.S1_a_at1/1111+15886678..15893723expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18697.2.A1_at--493--10634Chr11:15867424..15867443 (20 bp)
TTCGAACGACGCCACATTGCTACTT
LOC_Os11g28430
OsAffx.18697.2.A1_at--1110--1816Chr11:15867427..15867451 (25 bp)
ACGCCACATTGCTACTTTGCCATTT
LOC_Os11g28430
OsAffx.18697.2.A1_at--609--10715Chr11:15867435..15867459 (25 bp)
TTGCTACTTTGCCATTTCGACCAAA
LOC_Os11g28430
OsAffx.18697.2.A1_at--662--4434Chr11:15867445..15867469 (25 bp)
GCCATTTCGACCAAATTAGCTGATT
LOC_Os11g28430
OsAffx.18697.2.A1_at--146--10455Chr11:15867460..15867484 (25 bp)
TTAGCTGATTTGCAAATGATTTCCA
LOC_Os11g28430
OsAffx.18697.2.A1_at--156--735Chr11:15867475..15867499 (25 bp)
ATGATTTCCACCGTGGTGTGACAAA
LOC_Os11g28430
OsAffx.18697.2.A1_at--539--7474Chr01:34294797..34294821 (25 bp)
GTGTGACAAAATTGCCCCTGTGACC
NONE
OsAffx.18697.2.A1_at--988--2414Chr01:34294804..34294828 (25 bp)
AAAATTGCCCCTGTGACCATTTAGT
NONE
OsAffx.18697.2.A1_at--489--4535Chr11:15867508..15867527 (20 bp)
GCCCCTGTGACCATTTAGTTGACTT
LOC_Os11g28430
OsAffx.18697.2.A1_at--1010--10334Chr01:34294823..34294847 (25 bp)
TTTAGTTGACTTGCGTGGAGGAGAT
NONE
OsAffx.18697.2.A1_at--577--8051Chr02:5349179..5349203 (25 bp)
GGAGATGGATCCCTGCCCTGGCACC
NONE
Target Sequence 
TTCGAACGACGCCACATTGCTACTTTGCCATTTCGACCAAATTAGCTGATTTGCAAATGATTTCCACCGTGGTGTGACAA
AATTGCCCCTGTGACCATTTAGTTGACTTGCGTGGAGGAGATGGATCCCTGCCCTGGCACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18697.2.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis