Browse Element(s) Details


OsAffx.18704.1.S1_at

Description tigr:9639.m00545
TID=OsAffx.18704.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=GRAS family transcription factor, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0618011/11GRAS family transcription factor containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g06140Os.53021.1.S1_at11/1111+2921619..2925077Protein kinase domain containing protein, expressed
LOC_Os11g06150Os.55944.1.S1_at11/1111+2928581..2929746expressed protein
LOC_Os11g06159NANA11+2933102..2933350NA
LOC_Os11g06170Os.53732.1.S1_a_at11/1111+2935646..2938722Transcription factor RF2a, putative, expressed
LOC_Os11g06170Os.53732.2.S1_at4/1111+2935646..2938722Transcription factor RF2a, putative, expressed
LOC_Os11g06180OsAffx.18704.1.S1_at11/1111+2946066..2948127GRAS family transcription factor containing protein
LOC_Os11g06190Os.24665.1.S1_at11/1111+2948973..2954715expressed protein
LOC_Os11g06190Os.24665.1.S2_at10/1111+2948973..2954715expressed protein
LOC_Os11g06200OsAffx.30838.1.S1_at11/1111+2957362..2961572hypothetical protein
LOC_Os11g06210NANA11+2962130..2963611NB-ARC domain containing protein
LOC_Os11g06220Os.17131.1.S1_x_at11/1111+2967019..2970212NB-ARC domain containing protein, expressed
LOC_Os11g06220Os.17131.1.S1_at11/1111+2967019..2970212NB-ARC domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006808biological_processregulation of nitrogen utilization
GO:0008356biological_processasymmetric cell division
GO:0009630biological_processgravitropism
GO:0009740biological_processgibberellic acid mediated signaling
GO:0009938biological_processnegative regulation of gibberellic acid mediated signaling
GO:0010187biological_processnegative regulation of seed germination
GO:0010233biological_processphloem transport
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18704.1.S1_at--373--7011Chr11:2946891..2946915 (25 bp)
GTCACCATAGAAGAGGACCTAGTTA
LOC_Os11g06180
OsAffx.18704.1.S1_at--318--7691Chr11:2946928..2946952 (25 bp)
GGGTATCTCCATCTAGTGCCTCCTT
LOC_Os11g06180
OsAffx.18704.1.S1_at--561--10071Chr11:2946941..2946965 (25 bp)
TAGTGCCTCCTTTGTCGAGTTCTTC
LOC_Os11g06180
OsAffx.18704.1.S1_at--11--6071Chr11:2946957..2946981 (25 bp)
GAGTTCTTCTTCGAGGCATTGCATC
LOC_Os11g06180
OsAffx.18704.1.S1_at--1121--4931Chr11:2946972..2946996 (25 bp)
GCATTGCATCACTTCACCACGGTGT
LOC_Os11g06180
OsAffx.18704.1.S1_at--564--1711Chr11:2946987..2947011 (25 bp)
ACCACGGTGTTCGAGTCAATGGCGA
LOC_Os11g06180
OsAffx.18704.1.S1_at--394--871Chr11:2947005..2947029 (25 bp)
ATGGCGAGTTGCTTCATTGGTAGTA
LOC_Os11g06180
OsAffx.18704.1.S1_at--942--6931Chr11:2947024..2947048 (25 bp)
GTAGTAGTTATGAACCATGCCTGAG
LOC_Os11g06180
OsAffx.18704.1.S1_at--816--1731Chr11:2947037..2947061 (25 bp)
ACCATGCCTGAGACTTGTGGAGATG
LOC_Os11g06180
OsAffx.18704.1.S1_at--85--8431Chr11:2947072..2947096 (25 bp)
GGCCAAGGATACAGGATTTTGTGGT
LOC_Os11g06180
OsAffx.18704.1.S1_at--412--3291Chr11:2947940..2947964 (25 bp)
CAAATAAGGTCATCTGGTCAAGTTT
LOC_Os11g06180
Target Sequence 
GTCACCATAGAAGAGGACCTAGTTAGAATTGGAAGAGGGGTATCTCCATCTAGTGCCTCCTTTGTCGAGTTCTTCTTCGA
GGCATTGCATCACTTCACCACGGTGTTCGAGTCAATGGCGAGTTGCTTCATTGGTAGTAGTTATGAACCATGCCTGAGAC
TTGTGGAGATGGAGTTGCTGGGGCCAAGGATACAGGATTTTGTGGTGAAGTATGGGTCAGTGAGAGTTGAGGCCAATGCT
TCTGAGGTTTTGGAAGGGTTTATGGCTTGTGAGTTGAGTGCTTGCAACATAGCTCAGGCCAGGATGCTAGTTGGGCTGTT
CAACAGGGTGTTTGGGGTTGTGTTCAAGAAGATAAGTTTGTTAATGGTCTACTATATCTCCTTAGGGAAAAATGATTTGA
GAGAGCCAAATAAGGTCATCTGGTCAAGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18704.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis