Browse Element(s) Details


OsAffx.18710.1.S1_at

Description tigr:9639.m00595
TID=OsAffx.18710.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Ribosome inactivating protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0663011/11Ribosome inactivating protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g06600Os.46012.3.S1_x_at8/1111+3183767..3188285retrotransposon protein, putative, unclassified, expressed
LOC_Os11g06600Os.46012.2.S1_x_at7/1111+3183767..3188285retrotransposon protein, putative, unclassified, expressed
LOC_Os11g06600Os.27088.1.A1_x_at3/1111+3183767..3188285retrotransposon protein, putative, unclassified, expressed
LOC_Os11g06610OsAffx.7022.1.S1_at11/1111+3190193..319111160 kDa jasmonate-induced protein, putative
LOC_Os11g06620Os.47463.1.S1_x_at5/1111+3194553..3206778transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g06620Os.14491.2.S1_x_at5/1111+3194553..3206778transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g06620OsAffx.380.1.S1_at2/1111+3194553..3206778transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g06630OsAffx.18710.1.S1_at11/1111+3207208..3208083Ribosome inactivating protein
LOC_Os11g06640Os.47463.1.S1_x_at6/1111+3219183..3225068transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g06640Os.14491.2.S1_x_at5/1111+3219183..3225068transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g06650Os.53123.1.S1_at11/1111+3229614..3232441transcription elongation factor, putative, expressed
LOC_Os11g06650Os.52124.1.S1_at1/1111+3229614..3232441transcription elongation factor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18710.1.S1_at--954--3571Chr11:3207737..3207761 (25 bp)
CATTTCTGGGATGCGACGGCAGCTA
LOC_Os11g06630
OsAffx.18710.1.S1_at--839--2671Chr11:3207709..3207733 (25 bp)
AAGCTTACTTGGTGGTCGCGATGAA
LOC_Os11g06630
OsAffx.18710.1.S1_at--243--4011Chr11:3207622..3207646 (25 bp)
CGTCCATAAGCTGTCGGGCTACGAA
LOC_Os11g06630
OsAffx.18710.1.S1_at--442--1771Chr11:3207592..3207616 (25 bp)
ACCTGATCCATATGGCGCTGCAGAC
LOC_Os11g06630
OsAffx.18710.1.S1_at--509--2571Chr11:3207557..3207581 (25 bp)
AACTGGATCTGGTGCACCTGACCGT
LOC_Os11g06630
OsAffx.18710.1.S1_at--513--5811Chr11:3207495..3207519 (25 bp)
GACGCCGTGAACGATGGCCAAATCA
LOC_Os11g06630
OsAffx.18710.1.S1_at--1143--2251Chr11:3207476..3207500 (25 bp)
AAATCAGCCTCAACGAGCGGCAAGT
LOC_Os11g06630
OsAffx.18710.1.S1_at--1104--131Chr11:3207449..3207473 (25 bp)
ATTACTTGCGTAACTGGTGGCTTAT
LOC_Os11g06630
OsAffx.18710.1.S1_at--261--7571Chr11:3207419..3207443 (25 bp)
GGGCGCTACTCCAGGACGAGACAAC
LOC_Os11g06630
OsAffx.18710.1.S1_at--240--9991Chr11:3207373..3207397 (25 bp)
TAGCGAGACCGGTATCAACGACGAT
LOC_Os11g06630
OsAffx.18710.1.S1_at--596--3991Chr11:3207336..3207360 (25 bp)
CGTGTAGTGCTACTGGTGCTCAACA
LOC_Os11g06630
Target Sequence 
CATTTCTGGGATGCGACGGCAGCTACCCAAGCTTACTTGGTGGTCGCGATGAAGACGACGTTAAGAATATGTTGGTTAAT
GATATTGACCTGCGACAGGTCGTCCTGCTGGATGCCGTCCATAAGCTGTCGGGCTACGAACAACCACCTGATCCATATGG
CGCTGCAGACGATGACACCAAACTGGATCTGGTGCACCTGACCGTCGTCTTCTGCGAGGGCGCGAGGATGGCTCTGCACT
ACGACGCCGTGAACGATGGCCAAATCAGCCTCAACGAGCGGCAAGTAGATTACTTGCGTAACTGGTGGCTTATGTCACGG
GCGCTACTCCAGGACGAGACAACACCATGGCCCCGCAGGCTTAGTAGCGAGACCGGTATCAACGACGATGAGCAGGCTCG
CCGTGTAGTGCTACTGGTGCTCAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18710.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis