Browse Element(s) Details


OsAffx.7022.1.S1_at

Description tigr:9639.m00593
TID=OsAffx.7022.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to 60 kda jasmonate-induced protein. (barley
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0661011/1160 kDa jasmonate-induced protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g06570OsAffx.30844.1.S1_at11/1111+3155631..3171761transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os11g06570Os.23721.1.S1_s_at11/1111+3155631..3171761transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os11g06570Os.14491.2.S1_x_at6/1111+3155631..3171761transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os11g06570Os.47463.1.S1_x_at3/1111+3155631..3171761transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os11g06580OsAffx.7021.1.S1_at11/1111+3174948..3176057F-box domain containing protein
LOC_Os11g06590OsAffx.18709.1.S1_at11/1111+3179297..3179939trans-2-enoyl-CoA reductase, mitochondrial precursor, putative
LOC_Os11g06600Os.46012.3.S1_x_at8/1111+3183767..3188285retrotransposon protein, putative, unclassified, expressed
LOC_Os11g06600Os.46012.2.S1_x_at7/1111+3183767..3188285retrotransposon protein, putative, unclassified, expressed
LOC_Os11g06600Os.27088.1.A1_x_at3/1111+3183767..3188285retrotransposon protein, putative, unclassified, expressed
LOC_Os11g06610OsAffx.7022.1.S1_at11/1111+3190193..319111160 kDa jasmonate-induced protein, putative
LOC_Os11g06620Os.47463.1.S1_x_at5/1111+3194553..3206778transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g06620Os.14491.2.S1_x_at5/1111+3194553..3206778transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g06620OsAffx.380.1.S1_at2/1111+3194553..3206778transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g06630OsAffx.18710.1.S1_at11/1111+3207208..3208083Ribosome inactivating protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7022.1.S1_at--759--2091Chr11:3190519..3190543 (25 bp)
ACATCATGCTAACTGGTCCATCGTT
LOC_Os11g06610
OsAffx.7022.1.S1_at--302--6931Chr11:3190703..3190727 (25 bp)
GTATGGTCCCGCTGAGGTGAGCTAC
LOC_Os11g06610
OsAffx.7022.1.S1_at--525--3451Chr11:3190762..3190786 (25 bp)
CAGTCAAGCTGGTCCGTCGAGATGA
LOC_Os11g06610
OsAffx.7022.1.S1_at--630--3191Chr11:3190804..3190828 (25 bp)
CAATCACCGGTGTTCTTGGGAGGAT
LOC_Os11g06610
OsAffx.7022.1.S1_at--902--7651Chr11:3190821..3190845 (25 bp)
GGGAGGATCATCACGCGCAGCAAGC
LOC_Os11g06610
OsAffx.7022.1.S1_at--946--1591Chr11:3190843..3190867 (25 bp)
AGCTCCTCAATGTTGGTTGTGTCCT
LOC_Os11g06610
OsAffx.7022.1.S1_at--473--8791Chr11:3190867..3190891 (25 bp)
TGTTCTACAGCGACTTTGGCAGCAT
LOC_Os11g06610
OsAffx.7022.1.S1_at--724--391Chr11:3190904..3190928 (25 bp)
ATCAGACGGGTTGATCCCATTGGCG
LOC_Os11g06610
OsAffx.7022.1.S1_at--973--7271Chr11:3190944..3190968 (25 bp)
GTGCCAGCTATGATGCCGTTGGACT
LOC_Os11g06610
OsAffx.7022.1.S1_at--207--9151Chr11:3190969..3190993 (25 bp)
TGCGTTCTTCTTCCGGTGATGAGAT
LOC_Os11g06610
OsAffx.7022.1.S1_at--343--4031Chr11:3191009..3191033 (25 bp)
CGAGTTTGACCCTACGACTAGTGAT
LOC_Os11g06610
Target Sequence 
ACATCATGCTAACTGGTCCATCGTTTGCCACCTCAGCATATGCCCCCATCATCTTTACCCTTTGTCTCCATGACGGTAGC
CAAGAAGAGGATAACAATGAGAATGAGGTGGAGGTAATATACAATACCTGCAACGGTCTCTTCAACAACTACAACAGTAC
CATAATCGAGACAGTCAACACTGGGTATGGTCCCGCTGAGGTGAGCTACGCTGTGCTGACCAACGCCGTTGAAGGACAGG
TCACAGTCAAGCTGGTCCGTCGAGATGAACACAACGACCCCACTGCAATCACCGGTGTTCTTGGGAGGATCATCACGCGC
AGCAAGCTCCTCAATGTTGGTTGTGTCCTGTTCTACAGCGACTTTGGCAGCATCCCACACATAGGATCAGACGGGTTGAT
CCCATTGGCGAGGCGTGCGCTTGCAGTGCCAGCTATGATGCCGTTGGACTTGCGTTCTTCTTCCGGTGATGAGATTGTCA
GAGCTGCAGTCGAGTTTGACCCTACGACTAGTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7022.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis