Browse Element(s) Details


Os.23721.1.S1_s_at

Description gb:CB097168
DB_XREF= gi:27921360
DB_XREF=AF53-Rpf_13_F01_T7_003.ab1
CLONE=C0004729
TID=Os.23721.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.23721 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0657011/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g06490OsAffx.18707.1.S1_at8/1111+3130789..3132533Ribosome inactivating protein
LOC_Os11g06500OsAffx.20387.1.S1_x_at1/1111+3133931..3136258retrotransposon protein, putative, unclassified
LOC_Os11g06510OsAffx.7017.1.S1_at11/1111+3138276..3139388hypothetical protein
LOC_Os11g06520NANA11+3143396..3143821Pyruvate decarboxylase isozyme 3, putative
LOC_Os11g06530NANA11+3146073..3146934hypothetical protein
LOC_Os11g06540OsAffx.18708.1.S1_at11/1111+3147469..3147840hypothetical protein
LOC_Os11g06540OsAffx.18708.1.S1_x_at11/1111+3147469..3147840hypothetical protein
LOC_Os11g06550NANA11+3148556..3149096hypothetical protein
LOC_Os11g06560OsAffx.7019.1.S1_at11/1111+3150825..3151366hypothetical protein
LOC_Os11g06570OsAffx.30844.1.S1_at11/1111+3155631..3171761transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os11g06570Os.23721.1.S1_s_at11/1111+3155631..3171761transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os11g06570Os.14491.2.S1_x_at6/1111+3155631..3171761transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os11g06570Os.47463.1.S1_x_at3/1111+3155631..3171761transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os11g06580OsAffx.7021.1.S1_at11/1111+3174948..3176057F-box domain containing protein
LOC_Os11g06590OsAffx.18709.1.S1_at11/1111+3179297..3179939trans-2-enoyl-CoA reductase, mitochondrial precursor, putative
LOC_Os11g06600Os.46012.3.S1_x_at8/1111+3183767..3188285retrotransposon protein, putative, unclassified, expressed
LOC_Os11g06600Os.46012.2.S1_x_at7/1111+3183767..3188285retrotransposon protein, putative, unclassified, expressed
LOC_Os11g06600Os.27088.1.A1_x_at3/1111+3183767..3188285retrotransposon protein, putative, unclassified, expressed
LOC_Os11g06610OsAffx.7022.1.S1_at11/1111+3190193..319111160 kDa jasmonate-induced protein, putative
LOC_Os11g06620Os.47463.1.S1_x_at5/1111+3194553..3206778transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g06620Os.14491.2.S1_x_at5/1111+3194553..3206778transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g06620OsAffx.380.1.S1_at2/1111+3194553..3206778transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23721.1.S1_s_at--980--291Chr11:3169990..3170276 (25 bp)
ATAGCGGTAGTAGCGATGAGATTAA
LOC_Os11g06570
Os.23721.1.S1_s_at--53--1091Chr11:3171188..3171212 (25 bp)
AGGGCAGGACTGACGGCCGTACAAA
LOC_Os11g06570
Os.23721.1.S1_s_at--1133--8391Chr11:3171202..3171226 (25 bp)
GGCCGTACAAAAATCAAGTCTCTCA
LOC_Os11g06570
Os.23721.1.S1_s_at--322--2851Chr11:3171217..3171241 (25 bp)
AAGTCTCTCAGAATCACGACGAAAA
LOC_Os11g06570
Os.23721.1.S1_s_at--1082--4371Chr11:3171275..3171299 (25 bp)
CCAAGGAGGGCGATTATTTCAGCGT
LOC_Os11g06570
Os.23721.1.S1_s_at--384--10411Chr11:3171288..3171312 (25 bp)
TTATTTCAGCGTGCCGGTGGAGGAT
LOC_Os11g06570
Os.23721.1.S1_s_at--729--991Chr11:3171308..3171332 (25 bp)
AGGATGGCCAGATCGTGGCGTTCTT
LOC_Os11g06570
Os.23721.1.S1_s_at--584--1171Chr11:3171347..3171371 (25 bp)
AGTACATCAACGCTCTGGGCGTCTA
LOC_Os11g06570
Os.23721.1.S1_s_at--704--9431Chr11:3171360..3171384 (25 bp)
TCTGGGCGTCTACATCCTTGGTACC
LOC_Os11g06570
Os.23721.1.S1_s_at--729--3031Chr11:3171488..3171512 (25 bp)
AATCGTAAATGCACGCATGCAGCTA
LOC_Os11g06570
Os.23721.1.S1_s_at--492--4211Chr11:3171521..3171545 (25 bp)
CCGCCGTCAGTATAGTCATGCATGT
LOC_Os11g06570
Target Sequence 
ATAGCGGTAGTAGCGATGAGATTAATATTGAAGATGATGATGATTACGTGAATAAGCTGGAGGGCAGGACTGACGGCCGT
ACAAAAATCAAGTCTCTCAGAATCACGACGAAAAACAATAATAATCCCGATTGGCTCGGGGACAAAACCAAGGAGGGCGA
TTATTTCAGCGTGCCGGTGGAGGATGGCCAGATCGTGGCGTTCTTCGGCCGCACCAACCAGTACATCAACGCTCTGGGCG
TCTACATCCTTGGTACCCCTTACCAGCAATCCACCCCCTAGATCGATCGATCCATCCATCCACACACATATATTAATATA
AGTAAATGTCTACATACATGTGTGCATTAATTACGACAATAATCGTAAATGCACGCATGCAGCTAANGACGNTCCGCCGT
CAGTATAGTCATGCATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23721.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis